Os12g0101000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNase P subunit p30 family protein.
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Os12g0101000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNase P subunit p30 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.19 | 0.482 | 7.43 | 2.12 | 1.09 | -1.87 | 0.162 | 5.18 | 0.846 | 5.14 | 22 | 1505 | -- | -- |
| 122.58 | 0.516 | 7.57 | 1.1 | 1.06 | -2.14 | -0.253 | -- | 0.706 | 5.46 | 15.4 | 7620 | -- | -- |
| 105.26 | 0.478 | 7.43 | 2.12 | 1.09 | -1.86 | -- | 5.18 | 0.846 | 5.13 | 21.98 | 1503 | -- | -- |
| 120.11 | 0.51 | 7.56 | 1.11 | 1.08 | -2.26 | -- | -- | 0.657 | 5.14 | 6.918 | 7540 | -- | -- |
| 149.61 | 0.57 | 7.44 | 2.14 | -- | -2.14 | -- | 5.52 | 0.878 | -- | 22.37 | 1875 | -- | -- |
| 204.71 | 0.671 | 7.7 | -0.0419 | 1.07 | -- | 0.113 | -- | 0.0442 | 5.33 | -- | -- | -- | -- |
| 204.74 | 0.67 | 7.7 | -0.0417 | 1.07 | -- | -- | -- | 0.0437 | 5.33 | -- | -- | -- | -- |
| 166.52 | 0.604 | 7.64 | 0.468 | -- | -2.6 | -- | -- | 0.417 | -- | 6.918 | 7540 | -- | -- |
| 139.94 | 0.554 | 7.63 | -- | 0.765 | -2.47 | -- | -- | 0.341 | 8.03 | 9.151 | 7338 | -- | -- |
| 264.35 | 0.76 | 7.72 | -0.00516 | -- | -- | -- | -- | 0.0703 | -- | -- | -- | -- | -- |
| 204.79 | 0.669 | 7.7 | -- | 1.07 | -- | -- | -- | 0.0484 | 5.33 | -- | -- | -- | -- |
| 171.98 | 0.613 | 7.65 | -- | -- | -2.46 | -- | -- | 0.348 | -- | 9.972 | 4877 | -- | -- |
| 264.35 | 0.759 | 7.72 | -- | -- | -- | -- | -- | 0.0708 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 97.12 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 3 | 97.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 5 | 100.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 6 | 100.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 7 | 101.02 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 10 | 101.14 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 17 | 101.35 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 19 | 101.41 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 22 | 101.43 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 24 | 101.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 31 | 101.53 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 35 | 101.61 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 53 | 101.86 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 65 | 102.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 66 | 102.12 | wind | 5 | 43200 | > th | dose dependent | sin | 18 | NA |
| 69 | 102.16 | wind | 5 | 43200 | < th | dose independent | sin | 20 | NA |
| 88 | 102.32 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 122 | 102.59 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 131 | 102.67 | wind | 3 | 43200 | > th | dose dependent | sin | 22 | NA |
| 134 | 102.70 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 139 | 102.75 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 148 | 102.84 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 236 | 103.47 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 270 | 103.66 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 314 | 103.97 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 341 | 104.08 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 344 | 104.09 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 581 | 105.39 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 635 | 105.64 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 642 | 105.67 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 923 | 107.10 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 8 |