BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0421900 Os05g0421900|Os05g0421900
(331 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0421900 Similar to Gibberellin 20 oxidase 2 (EC 1.14.1... 567 e-162
Os01g0883800 Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibbe... 138 7e-33
Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (... 120 1e-27
Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (... 108 5e-24
Os03g0856700 Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibbe... 107 1e-23
Os07g0169700 Similar to GA 20-oxidase 3 107 2e-23
Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15) 87 2e-17
Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1... 87 2e-17
>Os05g0421900 Similar to Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin
C-20 oxidase 2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1
protein)
Length = 331
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/331 (86%), Positives = 287/331 (86%)
Query: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGERRLYPDFTWADF 60
MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGERRLYPDFTWADF
Sbjct: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGERRLYPDFTWADF 60
Query: 61 MRFTQRHYRADTRTLDAFARWLRPPACSGAAPIVILYLPDGSPELGLNRWLVARVLSNFC 120
MRFTQRHYRADTRTLDAFARWLRPPACSGAAPIVILYLPDGSPELGLNRWLVARVLSNFC
Sbjct: 61 MRFTQRHYRADTRTLDAFARWLRPPACSGAAPIVILYLPDGSPELGLNRWLVARVLSNFC 120
Query: 121 EAGEEEGVGDRRPATDHVAAGEGAVCGRPGAERRPLVAFSLKDRSLHDEFEIDMLRRFGW 180
EAGEEEGVGDRRPATDHVAAGEGAVCGRPGAERRPLVAFSLKDRSLHDEFEIDMLRRFGW
Sbjct: 121 EAGEEEGVGDRRPATDHVAAGEGAVCGRPGAERRPLVAFSLKDRSLHDEFEIDMLRRFGW 180
Query: 181 IVPAYTMPPDAMVLRFVIREEFSRTLAERLVLDIEKVMCQLDXXXXXXXXXXXXXXXXXX 240
IVPAYTMPPDAMVLRFVIREEFSRTLAERLVLDIEKVMCQLD
Sbjct: 181 IVPAYTMPPDAMVLRFVIREEFSRTLAERLVLDIEKVMCQLDALPSRLMPPVPPAPPSVS 240
Query: 241 XXXXXXXXXXXXXXXXXLHSMDLALRVDLLSAGGRHASPSPPPLAGAIEXXXXXXXXXHC 300
LHSMDLALRVDLLSAGGRHASPSPPPLAGAIE HC
Sbjct: 241 MGAHRAPPRRRAPHGPPLHSMDLALRVDLLSAGGRHASPSPPPLAGAIEAPPSSSPASHC 300
Query: 301 WPQQTHSRREQRERNEMGDKRGKERRLMWQC 331
WPQQTHSRREQRERNEMGDKRGKERRLMWQC
Sbjct: 301 WPQQTHSRREQRERNEMGDKRGKERRLMWQC 331
>Os01g0883800 Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20 oxidase
2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1 protein)
Length = 389
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/82 (80%), Positives = 71/82 (86%), Gaps = 2/82 (2%)
Query: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGERRLYPDFTWADF 60
MAL+NGRYKSCLHRAVV++ +ERRSLAFFLCPREDRVVRPP A + YPDFTWAD
Sbjct: 293 MALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQH--YPDFTWADL 350
Query: 61 MRFTQRHYRADTRTLDAFARWL 82
MRFTQRHYRADTRTLDAF RWL
Sbjct: 351 MRFTQRHYRADTRTLDAFTRWL 372
>Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (EC 4.1.1.15)
Length = 492
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/75 (86%), Positives = 65/75 (86%), Gaps = 4/75 (5%)
Query: 152 ERRPLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLA 207
E PLVAFSLKDRS HDEFEI DMLRRFGWIVPAYTMPPDA VLR VIREEFSRTLA
Sbjct: 371 EGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVVIREEFSRTLA 430
Query: 208 ERLVLDIEKVMCQLD 222
ERLVLDIEKVM QLD
Sbjct: 431 ERLVLDIEKVMYQLD 445
>Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (EC 4.1.1.15)
Length = 492
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 62/72 (86%), Gaps = 4/72 (5%)
Query: 155 PLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLAERL 210
PLVAFSLKD + H+EFEI D LRRFGWIVPAYTMPPDA VLR VIRE+FSRTLAERL
Sbjct: 374 PLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERL 433
Query: 211 VLDIEKVMCQLD 222
VLD+EKV+ +LD
Sbjct: 434 VLDVEKVLHELD 445
>Os03g0856700 Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20 oxidase
1) (GA 20-oxidase 1) (Os20ox)
Length = 372
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGER-RLYPDFTWAD 59
MAL+N RY+SCLHRAVV+ RRSLAFFLCP D VVRPP R+YPDFTW
Sbjct: 278 MALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVYPDFTWRA 337
Query: 60 FMRFTQRHYRADTRTLDAFARWL 82
+ FTQRHYRAD RTL AF+ WL
Sbjct: 338 LLDFTQRHYRADMRTLQAFSDWL 360
>Os07g0169700 Similar to GA 20-oxidase 3
Length = 367
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 2 ALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPP-AGAGAGERRLYPDFTWADF 60
ALTNGR+ SCLHRAVV+ RRSL FFL PR DRVV PP A A R +PDFTW +F
Sbjct: 274 ALTNGRHASCLHRAVVNGRVARRSLTFFLNPRLDRVVSPPPALVDAAHPRAFPDFTWREF 333
Query: 61 MRFTQRHYRADTRTLDAFARWLR 83
+ FTQRHYR+DT T+DAF W++
Sbjct: 334 LEFTQRHYRSDTNTMDAFVAWIK 356
>Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 501
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 56/72 (77%), Gaps = 4/72 (5%)
Query: 155 PLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLAERL 210
PLVAFSLKD + F+I + LRRFGWIVPAYTMP +A VLR VIRE+FSR+LAERL
Sbjct: 378 PLVAFSLKDSGRYTVFDISEHLRRFGWIVPAYTMPANAEHVAVLRVVIREDFSRSLAERL 437
Query: 211 VLDIEKVMCQLD 222
V DI K++ +LD
Sbjct: 438 VSDIVKILHELD 449
>Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)
Length = 484
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 155 PLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLAERL 210
PLVAFSLKD S + FE+ + LRRFGWIVPAYTMP DA V+R VIRE+FSR LAERL
Sbjct: 373 PLVAFSLKDSSRYTVFEVAESLRRFGWIVPAYTMPADAEHVAVMRVVIREDFSRGLAERL 432
Query: 211 VLDIEKVMCQLD 222
+ D+ K + +D
Sbjct: 433 ITDLTKTVADMD 444
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,881,755
Number of extensions: 508408
Number of successful extensions: 2101
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2099
Number of HSP's successfully gapped: 8
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)