Os05g0421900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20 oxidase 2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1 protein).
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Os05g0421900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20 oxidase 2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 569.02 | 1.12 | 5.39 | 3.32 | 2.46 | -3.17 | -2.44 | 5.72 | -0.136 | 5.34 | 25.1 | 1272 | -- | -- |
| 581.62 | 1.12 | 5.59 | 1.93 | 2.39 | -2.63 | -2.85 | -- | -0.508 | 5.35 | 25.21 | 1186 | -- | -- |
| 583.43 | 1.12 | 5.4 | 3.21 | 2.44 | -3.09 | -- | 5.21 | -0.165 | 5.44 | 25.2 | 1293 | -- | -- |
| 592.73 | 1.13 | 5.58 | 1.84 | 2.45 | -2.58 | -- | -- | -0.518 | 5.32 | 25.27 | 1235 | -- | -- |
| 703.02 | 1.23 | 5.44 | 2.89 | -- | -4.1 | -- | 5.9 | 0.0445 | -- | 23.2 | 558 | -- | -- |
| 826.88 | 1.35 | 5.64 | 1.02 | 2.25 | -- | -2.56 | -- | -0.795 | 5.9 | -- | -- | -- | -- |
| 842.53 | 1.36 | 5.63 | 1.01 | 2.24 | -- | -- | -- | -0.784 | 6.04 | -- | -- | -- | -- |
| 729.24 | 1.26 | 5.56 | 1.83 | -- | -3.63 | -- | -- | -0.279 | -- | 23.5 | 588 | -- | -- |
| 674.39 | 1.21 | 5.62 | -- | 2.43 | -2.22 | -- | -- | -0.77 | 5.42 | 25.37 | 1233 | -- | -- |
| 1103.03 | 1.55 | 5.67 | 1.07 | -- | -- | -- | -- | -0.733 | -- | -- | -- | -- | -- |
| 869.25 | 1.38 | 5.65 | -- | 2.26 | -- | -- | -- | -0.896 | 6.02 | -- | -- | -- | -- |
| 811.18 | 1.33 | 5.65 | -- | -- | -3.31 | -- | -- | -0.66 | -- | 24.8 | 604 | -- | -- |
| 1133.33 | 1.57 | 5.69 | -- | -- | -- | -- | -- | -0.852 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 550.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 3 | 550.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 5 | 551.28 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 7 | 551.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 16 | 552.26 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 18 | 552.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 21 | 552.30 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 26 | 552.32 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 16 |
| 38 | 552.65 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 131 | 553.70 | temperature | 30 | 14400 | < th | dose independent | sin | 17 | NA |
| 153 | 554.00 | temperature | 30 | 14400 | > th | dose independent | sin | 16 | NA |
| 203 | 554.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 204 | 554.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 209 | 555.13 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 210 | 555.13 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 214 | 555.16 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 230 | 555.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 231 | 555.61 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 291 | 556.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 292 | 556.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 312 | 556.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 319 | 556.48 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 339 | 556.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 392 | 556.54 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 434 | 557.11 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 585 | 558.42 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 684 | 562.81 | temperature | 25 | 14400 | > th | dose dependent | sin | 14 | NA |
| 687 | 563.02 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 719 | 564.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 720 | 564.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 773 | 564.66 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 781 | 564.76 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 843 | 565.76 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 894 | 566.30 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 909 | 566.42 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 994 | 566.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |