BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0421900 Os05g0421900|Os05g0421900
(331 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07200.1 | chr5:2243835-2245157 REVERSE LENGTH=381 123 1e-28
AT4G25420.1 | chr4:12990982-12992409 REVERSE LENGTH=378 119 3e-27
AT5G51810.1 | chr5:21055389-21056746 REVERSE LENGTH=379 118 4e-27
AT1G60980.1 | chr1:22452573-22454140 FORWARD LENGTH=377 115 4e-26
AT5G17330.1 | chr5:5711141-5714839 FORWARD LENGTH=503 109 2e-24
AT1G44090.1 | chr1:16760677-16762486 REVERSE LENGTH=386 106 2e-23
AT1G65960.2 | chr1:24552094-24557253 FORWARD LENGTH=495 104 7e-23
AT2G02000.1 | chr2:469505-471997 REVERSE LENGTH=501 103 1e-22
AT2G02010.1 | chr2:474375-476495 REVERSE LENGTH=494 100 2e-21
AT3G17760.1 | chr3:6078893-6080838 REVERSE LENGTH=495 84 1e-16
AT4G10490.1 | chr4:6483900-6485179 FORWARD LENGTH=349 53 2e-07
AT4G23340.1 | chr4:12195719-12196793 REVERSE LENGTH=325 52 4e-07
AT5G24530.1 | chr5:8378964-8383154 FORWARD LENGTH=342 52 6e-07
AT1G77330.1 | chr1:29063215-29064447 REVERSE LENGTH=308 50 2e-06
>AT5G07200.1 | chr5:2243835-2245157 REVERSE LENGTH=381
Length = 380
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 70/87 (80%), Gaps = 5/87 (5%)
Query: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPP----AGAGAGERRLYPDFT 56
MALTNGRYKSCLHRAVV+ E+ER++ AFFLCP+ ++VV+PP G +GER+ YPDFT
Sbjct: 290 MALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELVNGVKSGERK-YPDFT 348
Query: 57 WADFMRFTQRHYRADTRTLDAFARWLR 83
W+ F+ FTQ+HYRAD TLD F+ WL+
Sbjct: 349 WSMFLEFTQKHYRADMNTLDEFSIWLK 375
>AT4G25420.1 | chr4:12990982-12992409 REVERSE LENGTH=378
Length = 377
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPP-AGAGAGERRLYPDFTWAD 59
MAL+N RYKSCLHRAVV+ E ER+SLAFFLCP++DRVV PP + R YPDFTW+
Sbjct: 291 MALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRRYPDFTWSM 350
Query: 60 FMRFTQRHYRADTRTLDAFARWLRPP 85
F+ FTQ+HYRAD TL AF+ WL P
Sbjct: 351 FLEFTQKHYRADMNTLQAFSDWLTKP 376
>AT5G51810.1 | chr5:21055389-21056746 REVERSE LENGTH=379
Length = 378
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Query: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGA-GAGERRLYPDFTWAD 59
MAL+NG +KSCLHRAVV+RE R+S+AFFLCP++D+VV+PP+ + R YPDFTW+
Sbjct: 289 MALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILEKMKTRKYPDFTWSM 348
Query: 60 FMRFTQRHYRADTRTLDAFARWL 82
F+ FTQ+HYRAD TLD+F+ W+
Sbjct: 349 FLEFTQKHYRADVNTLDSFSNWV 371
>AT1G60980.1 | chr1:22452573-22454140 FORWARD LENGTH=377
Length = 376
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
Query: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGERRLYPDFTWADF 60
MALTNG YKSCLHRAVV+ E R++LAFFLCP+ D+VV+PP+ GER YPDFTW+ F
Sbjct: 291 MALTNGIYKSCLHRAVVNGETTRKTLAFFLCPKVDKVVKPPSEL-EGERA-YPDFTWSMF 348
Query: 61 MRFTQRHYRADTRTLDAFARWLR 83
+ FT +HYRAD TL+ F WL+
Sbjct: 349 LEFTMKHYRADMNTLEEFTNWLK 371
>AT5G17330.1 | chr5:5711141-5714839 FORWARD LENGTH=503
Length = 502
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 63/75 (84%), Gaps = 4/75 (5%)
Query: 152 ERRPLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLA 207
E PLVAFSLKD S H EFEI DMLRR+GWIVPAYTMPP+A VLR VIRE+FSRTLA
Sbjct: 371 EGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLA 430
Query: 208 ERLVLDIEKVMCQLD 222
ERLV+DIEKVM +LD
Sbjct: 431 ERLVIDIEKVMRELD 445
>AT1G44090.1 | chr1:16760677-16762486 REVERSE LENGTH=386
Length = 385
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 1 MALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGER--RLYPDFTWA 58
MAL+NG Y+SC HRAVV++E+ RRSL FF CPRED+++ PP GE R YPDFTWA
Sbjct: 293 MALSNGNYRSCYHRAVVNKEKVRRSLVFFSCPREDKIIVPPPELVEGEEASRKYPDFTWA 352
Query: 59 DFMRFTQRHYRADTRTLDAFARWL 82
+FTQ YR D TL F+ WL
Sbjct: 353 QLQKFTQSGYRVDNTTLHNFSSWL 376
>AT1G65960.2 | chr1:24552094-24557253 FORWARD LENGTH=495
Length = 494
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 60/72 (83%), Gaps = 4/72 (5%)
Query: 155 PLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLAERL 210
P+VAFSLKD S H+EFEI +MLRRFGWIVPAYTMP DA VLR VIRE+FSRTLAERL
Sbjct: 373 PVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERL 432
Query: 211 VLDIEKVMCQLD 222
V DI KV+ +LD
Sbjct: 433 VADISKVLHELD 444
>AT2G02000.1 | chr2:469505-471997 REVERSE LENGTH=501
Length = 500
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 60/72 (83%), Gaps = 4/72 (5%)
Query: 155 PLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLAERL 210
PLVAFSLKD S H+EFE+ +MLRRFGWIVPAYTMP DA VLR VIRE+FSRTLAERL
Sbjct: 374 PLVAFSLKDSSRHNEFEVAEMLRRFGWIVPAYTMPADAQHVTVLRVVIREDFSRTLAERL 433
Query: 211 VLDIEKVMCQLD 222
V D EKV+ +LD
Sbjct: 434 VADFEKVLHELD 445
>AT2G02010.1 | chr2:474375-476495 REVERSE LENGTH=494
Length = 493
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 58/72 (80%), Gaps = 4/72 (5%)
Query: 155 PLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLAERL 210
PLVAFSLKD S H+EFE+ LRRFGWIVPAYTMP DA VLR VIRE+FSRTLAERL
Sbjct: 374 PLVAFSLKDSSRHNEFEVAHTLRRFGWIVPAYTMPADAQHVTVLRVVIREDFSRTLAERL 433
Query: 211 VLDIEKVMCQLD 222
V D EKV+ +LD
Sbjct: 434 VADFEKVLHELD 445
>AT3G17760.1 | chr3:6078893-6080838 REVERSE LENGTH=495
Length = 494
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 55/72 (76%), Gaps = 4/72 (5%)
Query: 155 PLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDAM---VLRFVIREEFSRTLAERL 210
PLVAFSLKD S H FEI + LR+FGWI+PAYTMP DA VLR VIRE+FSR LA+RL
Sbjct: 373 PLVAFSLKDSSKHTVFEIAESLRKFGWIIPAYTMPADAQHIAVLRVVIREDFSRGLADRL 432
Query: 211 VLDIEKVMCQLD 222
+ I +V+ +++
Sbjct: 433 ITHIIQVLKEIE 444
>AT4G10490.1 | chr4:6483900-6485179 FORWARD LENGTH=349
Length = 348
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 2 ALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGERR---LYPDFTWA 58
++N +YKS LHRAVV+ + ER S+ F CP ED V+ P E +Y +FT+A
Sbjct: 264 VISNEKYKSVLHRAVVNSDMERISIPTFYCPSEDAVISPAQELINEEEDSPAIYRNFTYA 323
Query: 59 DFM 61
++
Sbjct: 324 EYF 326
>AT4G23340.1 | chr4:12195719-12196793 REVERSE LENGTH=325
Length = 324
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 2 ALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAG-AGAGERRLYPDFTWADF 60
A +NGR +S HR V+ + R SLAFFLC +++V+ P G G++R Y F +++
Sbjct: 232 AWSNGRLRSSEHRVVLRKLVNRVSLAFFLCFEDEKVILAPQEIVGEGKQRSYKSFKCSEY 291
Query: 61 MRFTQRH 67
++F Q +
Sbjct: 292 LKFRQSN 298
>AT5G24530.1 | chr5:8378964-8383154 FORWARD LENGTH=342
Length = 341
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 2 ALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGAGAGE----RRLYPDFTW 57
AL+NG YKS HRAV + E R S+A FLCP + V+ P E + +Y DFT+
Sbjct: 258 ALSNGVYKSVWHRAVTNTENPRLSVASFLCPADCAVMSPAKPLWEAEDDETKPVYKDFTY 317
Query: 58 ADFMR 62
A++ +
Sbjct: 318 AEYYK 322
>AT1G77330.1 | chr1:29063215-29064447 REVERSE LENGTH=308
Length = 307
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 2 ALTNGRYKSCLHRAVVHREQERRSLAFFLCPREDRVVRPPAGA-GAGERRLYPDFTWADF 60
L+NGRYKS HR + E RRS+A F P + P A A G + YP F + D+
Sbjct: 226 VLSNGRYKSAWHRVLAREEGNRRSIASFYNPSYKAAIGPAAVAEEEGSEKKYPKFVFGDY 285
Query: 61 M 61
M
Sbjct: 286 M 286
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.139 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,714,730
Number of extensions: 256668
Number of successful extensions: 681
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 14
Length of query: 331
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,392,385
Effective search space: 1947033320
Effective search space used: 1947033320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)