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Os03g0856700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20 oxidase 1) (GA 20-oxidase 1) (Os20ox).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.79 (0.0341) R2 : 0.603
β1 : 1.13 (0.127) R2dD : 0.0736 R2D : 0.0414
β2 : 2.08 (0.0849) R2dC : 0.583 R2C : 0.396
β3 : 1.89 (0.145) R2dE : 0.174 R2E : -0.0566
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0774 (0.0742) R2dN8 : 0.00128 R2N8 : -0.00892
σ : 0.634
deviance : 185.52
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C
peak time of C : 23.1
E
wheather : temperature
threshold : 30.63
memory length : 125
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.583
open length of G : 20

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.67 0.638 9.78 1.13 2.03 1.88 -0.516 -0.201 0.0975 23.2 29.96 114 0.733 20
184.7 0.633 9.79 1.1 2.06 1.89 -0.452 -- 0.081 23.1 30.39 116 0.7 19.9
185.6 0.635 9.78 1.1 2.02 1.87 -- 0.132 0.0913 23.1 29.98 111 0.733 20
185.52 0.634 9.79 1.13 2.08 1.89 -- -- 0.0774 23.1 30.63 125 0.583 20
332.77 0.85 9.79 1.2 -- 2.18 -- 0.944 0.067 -- 28.98 19 1.62 22.3
242.3 0.73 9.82 0.775 1.79 -- -0.291 -- -0.147 0.142 -- -- -- --
242.66 0.729 9.82 0.786 1.79 -- -- -- -0.146 0.12 -- -- -- --
310.39 0.824 9.68 1.41 -- 2.57 -- -- 0.349 -- 30.15 7 2.21 24
215.07 0.683 9.81 -- 2.4 1.76 -- -- -0.0642 23.4 37.45 139 0.533 19.8
444.32 0.985 9.78 0.844 -- -- -- -- -0.12 -- -- -- -- --
258.96 0.753 9.84 -- 1.8 -- -- -- -0.233 0.144 -- -- -- --
359.49 0.886 9.73 -- -- 2.19 -- -- 0.133 -- 30.15 7 2.21 24
463.1 1 9.8 -- -- -- -- -- -0.213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.66 radiation 10 43200 < th dose dependent rect. 22 5
3 184.94 temperature 30 90 < th dose dependent rect. 1 20
4 185.07 temperature 10 270 > th dose dependent rect. 19 20
6 185.98 temperature 30 10 < th dose dependent rect. 1 20
38 188.34 wind 9 43200 > th dose independent rect. 18 3
39 188.34 wind 9 43200 > th dose dependent rect. 18 3
58 189.86 temperature 10 270 > th dose dependent rect. 20 18
83 190.76 temperature 15 10 > th dose dependent rect. 21 19
101 191.88 wind 9 43200 < th dose independent rect. 18 3
112 192.86 radiation 1 43200 < th dose dependent rect. 24 1
120 193.37 temperature 20 10 > th dose dependent rect. 21 21
144 194.65 atmosphere 995 43200 < th dose independent rect. 14 12
156 194.93 atmosphere 995 43200 > th dose independent rect. 14 12
162 195.22 atmosphere 995 43200 < th dose dependent rect. 15 8
201 196.19 wind 9 43200 > th dose dependent rect. 18 7
204 196.23 atmosphere 995 43200 > th dose independent sin 16 NA
235 196.75 atmosphere 995 43200 < th dose independent sin 16 NA
247 196.90 radiation 20 14400 < th dose independent rect. 22 8
248 196.90 wind 9 43200 > th dose dependent rect. 18 10
306 198.07 temperature 30 270 < th dose dependent rect. 24 9
318 198.31 wind 9 43200 < th dose independent rect. 24 1
325 198.40 atmosphere 1005 43200 < th dose independent rect. 2 1
334 198.65 atmosphere 1005 43200 > th dose independent rect. 2 1
342 198.98 atmosphere 1005 43200 < th dose dependent rect. 15 1
356 199.21 atmosphere 995 270 > th dose dependent rect. 15 4
359 199.27 atmosphere 1005 43200 < th dose independent rect. 22 10
363 199.36 radiation 1 1440 < th dose dependent rect. 15 14
364 199.37 atmosphere 1005 43200 < th dose independent rect. 2 6
368 199.40 atmosphere 1005 43200 < th dose dependent rect. 5 1
370 199.41 temperature 10 270 > th dose dependent rect. 4 11
371 199.42 atmosphere 1005 43200 > th dose independent rect. 4 2
378 199.46 radiation 1 1440 < th dose dependent rect. 15 7
382 199.49 atmosphere 1010 43200 < th dose dependent rect. 7 2
396 199.57 atmosphere 1005 43200 < th dose dependent rect. 4 3
399 199.59 atmosphere 1005 43200 > th dose independent rect. 2 5
403 199.61 atmosphere 1005 43200 < th dose dependent rect. 2 6
404 199.62 atmosphere 1005 43200 < th dose dependent rect. 1 8
413 199.66 atmosphere 1005 43200 < th dose dependent rect. 24 10
433 199.77 atmosphere 1005 43200 < th dose dependent rect. 24 18
436 199.78 atmosphere 1005 43200 > th dose independent rect. 22 9
540 200.06 atmosphere 1005 43200 < th dose independent rect. 4 2
545 200.07 atmosphere 1005 43200 < th dose dependent sin 7 NA
587 200.17 atmosphere 1005 43200 < th dose dependent rect. 14 21
619 200.23 atmosphere 1005 43200 < th dose independent rect. 22 5
635 200.25 atmosphere 1005 43200 > th dose independent rect. 22 5
644 200.26 atmosphere 1005 43200 < th dose dependent no NA NA
664 200.28 atmosphere 1005 43200 < th dose dependent rect. 8 23
686 200.32 atmosphere 1005 43200 < th dose dependent rect. 4 23
701 200.35 temperature 25 270 < th dose independent rect. 23 21
723 200.39 wind 9 43200 > th dose independent rect. 18 7
766 200.46 atmosphere 995 90 > th dose dependent rect. 15 6
842 200.58 atmosphere 1005 43200 < th dose dependent sin 20 NA
859 200.60 atmosphere 995 43200 < th dose dependent rect. 17 5
866 200.61 atmosphere 995 43200 > th dose independent rect. 17 5
914 200.70 radiation 1 1440 < th dose dependent sin 16 NA
916 200.70 temperature 30 90 < th dose dependent rect. 15 6
974 200.79 temperature 15 10 > th dose dependent sin 1 NA
979 200.80 temperature 30 90 < th dose dependent rect. 13 8