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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0169700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GA 20-oxidase 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0108) R2 : 0.00101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0155 (0.0228) R2dN8 : 0.0013 R2N8 : 0.00101
σ : 0.204
deviance : 19.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.82 0.197 3.07 -0.188 0.104 -0.693 -0.0476 3.14 -0.0023 7.93 1000 10 -- --
17.96 0.199 3.04 0.0214 0.102 -0.139 -0.0638 -- -0.00256 7.77 1000 10 -- --
17.83 0.198 3.07 -0.192 0.104 -0.7 -- 3.18 -0.00216 8.1 1000 10 -- --
17.97 0.199 3.04 0.0201 0.101 -0.139 -- -- -0.00236 7.99 999.9 14 -- --
18.42 0.201 3.07 -0.171 -- -0.646 -- 2.87 -0.000888 -- 1000 10 -- --
18.49 0.202 3.04 0.0462 0.102 -- -0.0536 -- -0.0118 7.92 -- -- -- --
18.5 0.201 3.04 0.045 0.101 -- -- -- -0.0116 8.13 -- -- -- --
18.53 0.201 3.04 0.021 -- -0.139 -- -- -0.00104 -- 1000 18 -- --
17.98 0.199 3.04 -- 0.102 -0.142 -- -- -0.00431 7.98 1000 37 -- --
19.07 0.204 3.04 0.0458 -- -- -- -- -0.0104 -- -- -- -- --
18.55 0.201 3.04 -- 0.102 -- -- -- -0.0166 8.09 -- -- -- --
18.55 0.201 3.04 -- -- -0.143 -- -- -0.00307 -- 1000 18 -- --
19.12 0.204 3.04 -- -- -- -- -- -0.0155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.47 humidity 90.0 10 < th dose independent rect. 4 1
3 16.71 wind 1.0 30 > th dose independent rect. 4 1
4 16.73 atmosphere 1005.0 10 > th dose dependent rect. 4 1
6 16.83 wind 1.0 30 > th dose dependent rect. 4 1
7 16.86 temperature 25.0 10 > th dose independent rect. 4 1
10 16.87 temperature 25.0 90 > th dose dependent rect. 4 1
16 17.02 humidity 90.0 10 < th dose dependent rect. 4 1
19 17.03 atmosphere 1005.0 30 > th dose dependent rect. 2 3
25 17.09 atmosphere 1005.0 10 > th dose independent rect. 4 1
26 17.09 temperature 30.0 30 < th dose dependent rect. 4 1
27 17.11 wind 3.0 10 < th dose independent rect. 4 1
37 17.13 temperature 10.0 10 > th dose independent rect. 4 1
41 17.13 temperature 30.0 10 < th dose independent rect. 4 1
43 17.13 humidity 50.0 10 > th dose independent rect. 4 1
51 17.13 atmosphere 995.0 10 > th dose independent rect. 4 1
55 17.13 atmosphere 1010.0 10 < th dose independent rect. 4 1
59 17.13 radiation 1.0 10 < th dose independent rect. 4 1
69 17.13 precipitation 0.1 10 < th dose independent rect. 4 1
71 17.13 temperature 10.0 10 > th dose independent rect. 5 23
73 17.13 radiation 1.0 10 < th dose dependent rect. 4 1
83 17.13 precipitation 0.1 10 < th dose dependent rect. 4 1
85 17.14 temperature 10.0 30 > th dose dependent rect. 4 1
87 17.15 wind 9.0 10 < th dose dependent rect. 4 1
91 17.16 humidity 50.0 30 > th dose dependent rect. 4 1
95 17.18 wind 7.0 1440 < th dose independent rect. 5 1
97 17.18 temperature 10.0 1440 > th dose independent rect. 5 1
100 17.18 temperature 30.0 1440 < th dose independent rect. 5 1
104 17.18 humidity 50.0 1440 > th dose independent rect. 5 1
113 17.18 atmosphere 995.0 1440 > th dose independent rect. 5 1
114 17.18 atmosphere 1015.0 1440 < th dose independent rect. 5 1
115 17.18 radiation 20.0 1440 < th dose independent rect. 5 1
124 17.18 temperature 10.0 1440 > th dose independent rect. 6 23
131 17.19 atmosphere 1015.0 30 < th dose dependent rect. 4 1
136 17.22 temperature 25.0 90 > th dose independent rect. 2 3
142 17.26 temperature 25.0 90 > th dose dependent rect. 2 3
156 17.32 atmosphere 1000.0 720 > th dose independent rect. 21 14
158 17.33 temperature 25.0 270 > th dose dependent rect. 1 1
169 17.35 precipitation 0.1 30 < th dose independent rect. 5 23
171 17.35 precipitation 0.1 30 < th dose dependent rect. 5 23
174 17.36 wind 9.0 30 < th dose independent rect. 5 23
185 17.42 atmosphere 1000.0 720 > th dose independent rect. 23 10
198 17.46 temperature 25.0 720 > th dose dependent rect. 6 2
214 17.52 atmosphere 995.0 720 > th dose independent rect. 23 16
223 17.54 atmosphere 995.0 10 > th dose independent rect. 3 23
233 17.58 atmosphere 1000.0 10 < th dose independent rect. 7 20
234 17.58 atmosphere 1000.0 30 > th dose independent rect. 5 21
235 17.58 atmosphere 995.0 10 > th dose independent rect. 5 23
248 17.60 atmosphere 1000.0 720 > th dose independent rect. 3 8
249 17.60 temperature 30.0 270 < th dose independent rect. 1 13
257 17.61 atmosphere 995.0 720 > th dose independent rect. 11 10
264 17.62 atmosphere 995.0 720 > th dose independent rect. 9 14
282 17.66 atmosphere 1000.0 720 > th dose independent rect. 5 6
291 17.67 temperature 25.0 720 > th dose independent rect. 5 4
296 17.67 atmosphere 1000.0 10 > th dose independent rect. 21 23
308 17.68 atmosphere 1010.0 30 < th dose dependent rect. 2 1
324 17.70 temperature 30.0 720 < th dose independent rect. 17 20
330 17.71 atmosphere 1000.0 270 > th dose independent rect. 14 11
331 17.71 atmosphere 1000.0 10 > th dose independent rect. 14 12
342 17.71 atmosphere 1005.0 10 < th dose dependent rect. 7 20
343 17.71 atmosphere 1015.0 10 < th dose dependent rect. 7 20
349 17.72 temperature 30.0 4320 < th dose independent rect. 3 6
350 17.72 atmosphere 1000.0 10 > th dose independent rect. 16 10
351 17.72 atmosphere 995.0 1440 > th dose independent rect. 3 12
354 17.72 atmosphere 1000.0 90 > th dose independent rect. 11 22
365 17.73 atmosphere 995.0 720 > th dose independent rect. 3 23
366 17.73 atmosphere 995.0 720 > th dose independent rect. 15 23
383 17.74 atmosphere 1000.0 90 > th dose independent rect. 23 12
384 17.74 radiation 10.0 270 > th dose independent rect. 14 19
396 17.74 radiation 1.0 90 < th dose dependent rect. 1 23
413 17.75 precipitation 0.1 720 < th dose independent rect. 13 4
415 17.75 temperature 30.0 270 < th dose independent rect. 10 11
416 17.75 atmosphere 1000.0 90 > th dose independent rect. 5 14
423 17.75 wind 9.0 14400 > th dose dependent rect. 13 1
428 17.75 precipitation 0.1 720 < th dose dependent rect. 13 4
429 17.75 radiation 1.0 10 < th dose dependent rect. 4 10
431 17.75 atmosphere 1015.0 30 < th dose dependent rect. 9 18
441 17.76 radiation 1.0 10 < th dose independent rect. 4 10
443 17.76 humidity 60.0 10 > th dose independent rect. 14 12
446 17.76 radiation 10.0 270 > th dose independent rect. 16 17
448 17.76 atmosphere 995.0 720 > th dose independent rect. 17 20
449 17.76 wind 1.0 90 > th dose independent rect. 5 22
468 17.77 humidity 90.0 720 < th dose independent rect. 1 2
472 17.77 temperature 25.0 10 > th dose independent rect. 20 10
498 17.78 precipitation 0.1 720 < th dose independent rect. 15 8
501 17.78 wind 9.0 720 < th dose independent rect. 17 20
505 17.78 wind 9.0 10 < th dose independent rect. 3 23
518 17.78 precipitation 0.1 720 < th dose dependent rect. 15 8
519 17.78 radiation 30.0 90 < th dose dependent rect. 3 12
520 17.78 radiation 1.0 90 < th dose dependent rect. 3 13
521 17.78 temperature 25.0 30 > th dose dependent rect. 16 19
524 17.78 temperature 25.0 30 > th dose dependent rect. 14 21
527 17.79 radiation 10.0 270 > th dose independent sin 12 NA
530 17.79 radiation 10.0 270 > th dose independent rect. 8 1
535 17.79 radiation 10.0 270 > th dose independent rect. 6 3
547 17.79 atmosphere 1000.0 10 > th dose independent rect. 2 14
550 17.79 precipitation 0.1 720 < th dose independent rect. 11 16
552 17.79 atmosphere 1000.0 270 > th dose independent rect. 10 19
564 17.79 precipitation 0.1 720 < th dose dependent rect. 11 16
570 17.80 wind 9.0 1440 < th dose independent rect. 3 3
571 17.80 temperature 10.0 1440 > th dose independent rect. 3 3
574 17.80 temperature 30.0 1440 < th dose independent rect. 3 3
578 17.80 humidity 50.0 1440 > th dose independent rect. 3 3
588 17.80 atmosphere 995.0 1440 > th dose independent rect. 3 3
589 17.80 radiation 20.0 1440 < th dose independent rect. 3 3
600 17.80 atmosphere 995.0 720 > th dose independent rect. 9 12
601 17.80 radiation 40.0 30 < th dose independent rect. 14 12
608 17.80 atmosphere 1000.0 10 < th dose independent rect. 22 20
609 17.80 temperature 10.0 1440 > th dose independent rect. 6 21
620 17.80 temperature 25.0 30 > th dose dependent rect. 24 11
634 17.81 wind 1.0 10 < th dose independent rect. 2 1
635 17.81 temperature 25.0 1440 < th dose independent rect. 1 1
637 17.81 atmosphere 1000.0 720 > th dose independent rect. 23 2
642 17.81 wind 9.0 720 < th dose independent rect. 3 8
644 17.81 temperature 10.0 720 > th dose independent rect. 11 10
645 17.81 humidity 60.0 720 > th dose independent rect. 23 10
646 17.81 precipitation 0.1 720 < th dose independent rect. 23 10
648 17.81 atmosphere 1000.0 10 > th dose independent rect. 2 12
649 17.81 atmosphere 1000.0 270 > th dose independent rect. 5 12
650 17.81 radiation 1.0 10 < th dose independent rect. 2 12
652 17.81 atmosphere 1000.0 270 > th dose independent rect. 1 13
654 17.81 radiation 1.0 90 < th dose independent rect. 3 13
655 17.81 temperature 10.0 720 > th dose independent rect. 21 14
658 17.81 atmosphere 1000.0 10 < th dose independent rect. 24 18
661 17.81 temperature 30.0 270 < th dose independent rect. 9 20
667 17.81 atmosphere 1000.0 10 < th dose independent rect. 20 22
673 17.81 radiation 1.0 90 < th dose independent rect. 1 23
674 17.81 wind 1.0 30 < th dose dependent rect. 2 1
685 17.81 precipitation 0.1 720 < th dose dependent rect. 23 10
701 17.81 radiation 1.0 90 < th dose dependent rect. 2 21
703 17.81 radiation 1.0 90 < th dose dependent rect. 19 22
704 17.82 atmosphere 1000.0 10 > th dose independent no NA NA
706 17.82 atmosphere 1000.0 10 < th dose independent no NA NA
708 17.82 temperature 25.0 720 > th dose independent rect. 8 1
710 17.82 wind 1.0 14400 > th dose independent rect. 1 2
719 17.82 wind 7.0 720 < th dose independent rect. 1 4
722 17.82 atmosphere 1000.0 720 > th dose independent rect. 1 4
725 17.82 wind 9.0 720 < th dose independent rect. 23 10
726 17.82 temperature 10.0 720 > th dose independent rect. 23 10
730 17.82 wind 7.0 720 < th dose independent rect. 17 12
734 17.82 temperature 30.0 4320 < th dose independent rect. 20 13
736 17.82 temperature 10.0 720 > th dose independent rect. 9 14
738 17.82 humidity 50.0 720 > th dose independent rect. 21 14
763 17.82 atmosphere 1000.0 10 < th dose independent rect. 1 23
766 17.82 atmosphere 1000.0 10 < th dose independent rect. 13 23
767 17.82 atmosphere 1000.0 10 < th dose independent rect. 17 23
775 17.82 temperature 10.0 10 > th dose dependent rect. 2 1
781 17.82 wind 9.0 720 < th dose dependent rect. 2 3
814 17.83 temperature 25.0 10 < th dose independent rect. 2 1
815 17.83 humidity 80.0 10 > th dose independent rect. 2 1
835 17.83 temperature 10.0 720 > th dose independent rect. 1 4
836 17.83 temperature 30.0 720 < th dose independent rect. 1 4
837 17.83 humidity 50.0 720 > th dose independent rect. 1 4
841 17.83 atmosphere 1000.0 720 > th dose independent rect. 5 4
842 17.83 radiation 20.0 720 < th dose independent rect. 1 4
846 17.83 atmosphere 995.0 720 > th dose independent rect. 7 8
847 17.83 temperature 30.0 720 < th dose independent rect. 23 10
856 17.83 atmosphere 1000.0 720 > th dose independent rect. 21 18
862 17.83 atmosphere 1000.0 720 > th dose independent rect. 21 20
863 17.83 precipitation 0.1 720 < th dose independent rect. 5 20
871 17.83 atmosphere 1000.0 90 > th dose independent rect. 13 22
877 17.83 atmosphere 1000.0 10 > th dose independent rect. 11 23
883 17.83 atmosphere 1000.0 10 < th dose independent rect. 9 23
887 17.83 atmosphere 1000.0 10 < th dose independent rect. 15 23
924 17.83 precipitation 0.1 720 < th dose dependent rect. 5 20
944 17.84 wind 5.0 4320 < th dose independent rect. 14 1
946 17.84 temperature 10.0 10 > th dose independent rect. 2 1
953 17.84 humidity 50.0 10 > th dose independent rect. 2 1
961 17.84 atmosphere 995.0 10 > th dose independent rect. 2 1
963 17.84 atmosphere 1010.0 10 < th dose independent rect. 2 1
967 17.84 radiation 1.0 10 < th dose independent rect. 2 1
977 17.84 precipitation 0.1 10 < th dose independent rect. 2 1
982 17.84 wind 1.0 720 > th dose independent rect. 13 4
985 17.84 temperature 10.0 720 > th dose independent rect. 13 4
987 17.84 atmosphere 1015.0 720 < th dose independent rect. 13 4
988 17.84 temperature 10.0 720 > th dose independent rect. 3 8
989 17.84 temperature 10.0 720 > th dose independent rect. 15 8
991 17.84 atmosphere 1015.0 720 < th dose independent rect. 11 10
997 17.84 wind 9.0 720 < th dose independent rect. 21 14
1000 17.84 temperature 10.0 720 > th dose independent rect. 11 16