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Os01g0883800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin C-20 oxidase 2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1 protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.06 (0.0613) R2 : 0.657
β1 : 3.8 (0.23) R2dD : 0.224 R2D : 0.0571
β2 : 1.8 (0.157) R2dC : 0.114 R2C : 0.226
β3 : -3.89 (0.216) R2dE : 0.296 R2E : 0.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.09 (0.131) R2dN8 : 0.0699 R2N8 : -0.0061
σ : 1.14
deviance : 603.66
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_____
C
peak time of C : 10.8
E
wheather : temperature
threshold : 24.76
memory length : 915
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.42
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
584.95 1.14 8.92 5.21 1.83 -4.66 1.97 9.08 1.21 11.1 25.5 892 8.25 --
597.12 1.14 9.07 3.68 1.85 -3.79 1.25 -- 1.03 11 24.9 915 9.26 --
597.42 1.14 8.92 4.85 1.74 -4.39 -- 5.9 1.36 10.9 24.85 915 9.38 --
603.66 1.14 9.06 3.8 1.8 -3.89 -- -- 1.09 10.8 24.76 915 9.42 --
700.48 1.23 8.92 4.96 -- -5.7 -- 4.98 1.68 -- 22.69 807 10.7 --
980.67 1.47 9.12 2.82 2.9 -- 2.39 -- 0.828 11.9 -- -- -- --
1005.03 1.48 9.11 2.91 2.89 -- -- -- 0.837 11.8 -- -- -- --
685.37 1.22 9.03 4.14 -- -5.88 -- -- 1.43 -- 16.31 894 12.8 --
956.73 1.44 9.18 -- 2.02 -3.25 -- -- 0.525 11 25.3 852 7.7 --
1530.18 1.83 9.17 2.83 -- -- -- -- 0.8 -- -- -- -- --
1228.67 1.64 9.18 -- 2.85 -- -- -- 0.512 11.7 -- -- -- --
1083.36 1.53 9.18 -- -- -4.76 -- -- 0.782 -- 8.362 884 13.1 --
1741.12 1.95 9.24 -- -- -- -- -- 0.486 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 596.18 temperature 25 720 > th dose dependent rect. 17 2
2 596.44 temperature 25 720 > th dose dependent rect. 16 8
4 597.88 temperature 25 720 > th dose dependent rect. 17 15
29 610.34 temperature 25 720 > th dose dependent sin 13 NA
93 656.52 radiation 1 720 > th dose independent rect. 17 2
106 656.99 temperature 30 720 > th dose independent rect. 17 2
129 659.78 humidity 90 720 < th dose dependent rect. 17 4
150 662.81 temperature 25 1440 > th dose dependent rect. 7 17
152 662.87 humidity 90 720 < th dose dependent rect. 17 2
172 663.62 temperature 25 1440 > th dose dependent rect. 11 23
213 664.52 temperature 30 720 < th dose independent rect. 16 15
221 664.61 temperature 25 1440 > th dose dependent rect. 16 23
223 664.70 temperature 25 1440 > th dose dependent no NA NA
246 665.16 temperature 25 1440 > th dose dependent rect. 20 23
403 668.98 temperature 30 1440 > th dose independent sin 14 NA
415 669.41 temperature 30 1440 > th dose independent rect. 14 5
439 669.61 radiation 20 1440 < th dose dependent rect. 18 9
480 670.56 temperature 30 1440 < th dose independent rect. 14 13
483 670.68 temperature 30 1440 < th dose independent rect. 14 15
484 670.69 temperature 30 1440 < th dose independent rect. 14 11
486 670.76 temperature 30 1440 < th dose independent rect. 14 18
502 671.06 temperature 30 1440 < th dose independent sin 15 NA
503 671.06 temperature 30 1440 < th dose independent rect. 14 7
519 671.93 humidity 80 720 < th dose dependent rect. 17 15
527 672.09 temperature 30 720 < th dose independent rect. 16 8
566 673.55 temperature 30 1440 < th dose independent rect. 14 22
574 674.02 temperature 30 1440 > th dose independent rect. 11 8
589 674.05 radiation 10 1440 < th dose dependent rect. 18 7
590 674.21 radiation 1 720 > th dose dependent rect. 17 13
597 674.63 temperature 30 1440 < th dose independent rect. 11 16
598 674.67 temperature 30 1440 < th dose independent rect. 11 18
599 674.70 temperature 30 1440 < th dose independent rect. 11 21
601 674.72 temperature 30 1440 < th dose independent rect. 11 14
626 674.93 temperature 30 1440 < th dose independent rect. 11 10
628 674.95 temperature 30 1440 < th dose independent rect. 11 8
690 675.80 temperature 30 1440 > th dose independent rect. 13 23
722 675.97 temperature 30 1440 < th dose independent rect. 17 23
740 676.68 temperature 30 1440 > th dose independent rect. 17 23
743 676.74 radiation 1 720 > th dose dependent rect. 17 2
822 678.45 humidity 50 720 > th dose dependent rect. 16 8
839 678.82 temperature 30 1440 < th dose independent rect. 7 20
840 678.83 temperature 30 1440 < th dose independent rect. 7 22
841 678.83 temperature 30 1440 < th dose independent rect. 2 23
842 678.83 temperature 30 1440 < th dose independent rect. 4 23
846 678.90 temperature 30 1440 < th dose independent rect. 7 18
847 678.91 temperature 30 1440 < th dose independent rect. 4 21
852 678.95 temperature 30 1440 < th dose independent rect. 22 23
854 678.96 temperature 30 1440 < th dose independent no NA NA
858 678.97 temperature 30 1440 < th dose independent rect. 2 19
860 678.97 temperature 30 1440 < th dose independent rect. 22 21
863 678.97 temperature 30 1440 < th dose independent rect. 20 23
864 678.98 temperature 30 1440 < th dose independent rect. 2 17
882 679.04 temperature 30 1440 < th dose independent rect. 7 14
886 679.05 temperature 30 1440 < th dose independent rect. 7 12
889 679.05 temperature 30 1440 < th dose independent rect. 4 17
893 679.06 temperature 30 1440 < th dose independent rect. 4 15
935 679.24 humidity 70 720 > th dose independent sin 12 NA
964 679.72 temperature 30 1440 > th dose independent no NA NA