Os03g0236200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamate decarboxylase isozyme 3 (EC 4.1.1.15).
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Os03g0236200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutamate decarboxylase isozyme 3 (EC 4.1.1.15).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 380.82 | 0.917 | 7.36 | -0.177 | 1.38 | 4.12 | 1.19 | 1.4 | 0.0934 | 14.3 | 29.04 | 9 | -- | -- |
| 382.83 | 0.911 | 7.33 | 0.0627 | 1.38 | 4.08 | 0.758 | -- | 0.141 | 14.3 | 29.23 | 8 | -- | -- |
| 384.43 | 0.913 | 7.35 | -0.0332 | 1.35 | 4.03 | -- | 0.432 | 0.108 | 14.3 | 29.13 | 8 | -- | -- |
| 384.52 | 0.913 | 7.33 | 0.0713 | 1.36 | 4.06 | -- | -- | 0.145 | 14.2 | 29.1 | 8 | -- | -- |
| 408.26 | 0.941 | 7.38 | 0.251 | -- | 3.43 | -- | -0.244 | -0.0186 | -- | 34.9 | 1390 | -- | -- |
| 612.79 | 1.16 | 7.52 | -0.893 | 0.0168 | -- | 0.72 | -- | -0.68 | 18.4 | -- | -- | -- | -- |
| 614.07 | 1.16 | 7.52 | -0.903 | 0.023 | -- | -- | -- | -0.678 | 20.4 | -- | -- | -- | -- |
| 407.84 | 0.941 | 7.38 | 0.196 | -- | 3.46 | -- | -- | -0.0404 | -- | 65.1 | 1390 | -- | -- |
| 384.67 | 0.913 | 7.33 | -- | 1.35 | 4.04 | -- | -- | 0.142 | 14.2 | 29.08 | 8 | -- | -- |
| 614.1 | 1.16 | 7.52 | -0.903 | -- | -- | -- | -- | -0.678 | -- | -- | -- | -- | -- |
| 635.55 | 1.18 | 7.5 | -- | 0.032 | -- | -- | -- | -0.578 | 18.2 | -- | -- | -- | -- |
| 408.72 | 0.942 | 7.39 | -- | -- | 3.38 | -- | -- | -0.0744 | -- | 82.16 | 1389 | -- | -- |
| 635.61 | 1.18 | 7.5 | -- | -- | -- | -- | -- | -0.578 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 372.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 4 | 376.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 10 | 381.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 11 | 381.87 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 12 | 381.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 13 | 382.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 15 | 383.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 19 | 384.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 22 | 385.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 24 | 385.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 29 | 386.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 36 | 387.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 38 | 387.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 65 | 390.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 86 | 391.26 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 106 | 392.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 109 | 392.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 110 | 392.52 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 123 | 393.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 140 | 393.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 146 | 393.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 194 | 395.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 195 | 395.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 232 | 396.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 242 | 396.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 255 | 397.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 22 |
| 264 | 397.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 337 | 399.15 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 375 | 399.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 394 | 400.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 431 | 400.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 449 | 401.26 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 456 | 401.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 503 | 402.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 526 | 402.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 531 | 402.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 563 | 402.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 624 | 403.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 991 | 406.15 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |