BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0236200 Os03g0236200|AK071556
(492 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (... 952 0.0
Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (... 845 0.0
Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1... 772 0.0
Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15) 766 0.0
Os04g0447800 Glutamate decarboxylase (EC 4.1.1.15) 697 0.0
Os05g0421900 Similar to Gibberellin 20 oxidase 2 (EC 1.14.1... 120 2e-27
Os01g0100900 Pyridoxal-dependent decarboxylase family protein 85 2e-16
>Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (EC 4.1.1.15)
Length = 492
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/492 (93%), Positives = 461/492 (93%)
Query: 1 MVLSKAVSESDMSVHSTFASRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNPRLNL 60
MVLSKAVSESDMSVHSTFASRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNPRLNL
Sbjct: 1 MVLSKAVSESDMSVHSTFASRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVG 120
ASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVG
Sbjct: 61 ASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLRDGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVXXXXXXXXXXXXETGWETP 240
VKLRDGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDV ETGWETP
Sbjct: 181 VKLRDGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVKLLNDLLDKKNKETGWETP 240
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEEL 300
IHVDAASGGFIAPFLYPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEEL 300
Query: 301 IFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVK 360
IFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVK
Sbjct: 301 IFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVK 360
Query: 361 TGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVV 420
TGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVV
Sbjct: 361 TGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVV 420
Query: 421 IREEFSRTLAERLVLDIEKVMYQLDXXXXXXXXXXXXXXXXXXXKKSELETQRSVTEAWK 480
IREEFSRTLAERLVLDIEKVMYQLD KKSELETQRSVTEAWK
Sbjct: 421 IREEFSRTLAERLVLDIEKVMYQLDALPSRLMPPVPPAPLLVVAKKSELETQRSVTEAWK 480
Query: 481 KFVLAKRTNGVC 492
KFVLAKRTNGVC
Sbjct: 481 KFVLAKRTNGVC 492
>Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (EC 4.1.1.15)
Length = 492
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/493 (82%), Positives = 433/493 (87%), Gaps = 2/493 (0%)
Query: 1 MVLSKAVSESDMSVHSTFASRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNPRLNL 60
MVLS VS SD SVHSTFASRYVR SLPR+RMPE SIPKEAAYQIINDELMLDGNPRLNL
Sbjct: 1 MVLSHGVSGSDESVHSTFASRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVG 120
ASFVTTWMEPECDKLI A++NKNYVDMDEYPVTTELQNRCVNMIAHLF+APLG+ ETAVG
Sbjct: 61 ASFVTTWMEPECDKLIQASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRRWQNK KA GKP DKPNI+TGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRRWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLRDGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVXXXXXXXXXXXXETGWETP 240
VKL DGYYVMDP KAVDMV+ENTICVAAILGSTLNGEFEDV ETGW+TP
Sbjct: 181 VKLSDGYYVMDPAKAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEEL 300
IHVDAASGGFIAPFLYPELEWDFRLP VKSINVSGHKYGLVYAGIGWCIWR+KEDLPEEL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEEL 300
Query: 301 IFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVK 360
IFHINYLG DQPTFTLNFSKGSSQVIAQYYQLIR GFEGY+NIMENC ENAMVLK+GL K
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLEK 360
Query: 361 TGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVV 420
TGRF+IVSKD GVPLVAFSLKD +RH+EFEISD LRRFGWIVPAYTMPPDAQHVTVLRVV
Sbjct: 361 TGRFNIVSKDNGVPLVAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRVV 420
Query: 421 IREEFSRTLAERLVLDIEKVMYQLDXXXXXXXXXXXXXXXXXXXKKSELETQRSVTEAWK 480
IRE+FSRTLAERLVLD+EKV+++LD ++ E+E QR V WK
Sbjct: 421 IREDFSRTLAERLVLDVEKVLHELDALPARVVANGGDAAAASASER-EMEKQREVISLWK 479
Query: 481 KFVLA-KRTNGVC 492
+ VLA K+TNGVC
Sbjct: 480 RAVLAKKKTNGVC 492
>Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)
Length = 484
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/492 (74%), Positives = 411/492 (83%), Gaps = 8/492 (1%)
Query: 1 MVLSKAVSESDMSVHSTFASRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNPRLNL 60
M LS A + M STFASRYVR +LPR+RMPE SIPK+AAYQIINDELMLDGNPRLNL
Sbjct: 1 MALSTAQTGESMH-SSTFASRYVRTALPRFRMPEKSIPKDAAYQIINDELMLDGNPRLNL 59
Query: 61 ASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVG 120
ASFVTTWMEPECDKL+MAAINKNYVDMDEYPVTTELQNRCVNMIAHLF+AP+G+DETAVG
Sbjct: 60 ASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETAVG 119
Query: 121 VGTVGSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKR+WQN+ KAEGKP DKPNI+TGANVQVCWEKFARYFEVELKE
Sbjct: 120 VGTVGSSEAIMLAGLAFKRKWQNRMKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKE 179
Query: 181 VKLRDGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVXXXXXXXXXXXXETGWETP 240
VKL GYYVM+PEKAV+MV+ENTICVAAILGSTLNGEFEDV ETGW TP
Sbjct: 180 VKLTQGYYVMNPEKAVEMVDENTICVAAILGSTLNGEFEDVKMLNDLLTAKNAETGWNTP 239
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEEL 300
IHVDAASGGFIAPF+YPELEWDFRLP VKSINVSGHKYGLVYAG+GW IWRNKEDLP+EL
Sbjct: 240 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPDEL 299
Query: 301 IFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVK 360
IFHINYLG DQPTFTLNFSKGS+Q+IAQYYQLIR GFEGY++IM+NC +NA VL+EG+ K
Sbjct: 300 IFHINYLGADQPTFTLNFSKGSNQIIAQYYQLIRLGFEGYKDIMQNCRDNATVLREGIEK 359
Query: 361 TGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVV 420
TG FD+VSKD GVPLVAFSLKD SR+ FE+++ LRRFGWIVPAYTMP DA+HV V+RVV
Sbjct: 360 TGHFDVVSKDSGVPLVAFSLKDSSRYTVFEVAESLRRFGWIVPAYTMPADAEHVAVMRVV 419
Query: 421 IREEFSRTLAERLVLDIEKVMYQLDXXXXXXXXXXXXXXXXXXXKKSELETQRSVTEAWK 480
IRE+FSR LAERL+ D+ K + +D E ++ VT W+
Sbjct: 420 IREDFSRGLAERLITDLTKTVADMDAHAVKKAAAEPAKKTVR-------EIEKEVTTYWR 472
Query: 481 KFVLAKRTNGVC 492
FV K+++ VC
Sbjct: 473 SFVARKKSSLVC 484
>Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 501
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/502 (73%), Positives = 417/502 (83%), Gaps = 11/502 (2%)
Query: 1 MVLSKAVSESDMSV---HSTF-ASRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNP 56
MV+S A ++SD + +STF ASRYVR LPR+RMPE SIP+EAAYQIINDELMLDGNP
Sbjct: 1 MVVSVAATDSDTAQPVQYSTFFASRYVRDPLPRFRMPEQSIPREAAYQIINDELMLDGNP 60
Query: 57 RLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDE 116
RLNLASFVTTWMEPECDKLIM ++NKNYVDMDEYPVTTELQNRCVNMIAHLF+AP+ EDE
Sbjct: 61 RLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIKEDE 120
Query: 117 TAVGVGTVGSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEV 176
TA+GVGTVGSSEAIMLAGLAFKR+WQNKRK +GKP DKPNI+TGANVQVCWEKFARYFEV
Sbjct: 121 TAIGVGTVGSSEAIMLAGLAFKRKWQNKRKEQGKPCDKPNIVTGANVQVCWEKFARYFEV 180
Query: 177 ELKEVKLRDGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVXXXXXXXXXXXXETG 236
ELKEVKL +GYYVMDP KAV+MV+ENTICVAAILGSTL GEFEDV ETG
Sbjct: 181 ELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNNLLTEKNKETG 240
Query: 237 WETPIHVDAASGGFIAPFLYPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDL 296
W+ PIHVDAASGGFIAPFLYPELEWDFRLP VKSINVSGHKYGLVY G+GW IWR+KEDL
Sbjct: 241 WDVPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVIWRSKEDL 300
Query: 297 PEELIFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKE 356
PEELIFHINYLGTDQPTFTLNFSKGSSQ+IAQYYQLIR GFEGY+NIM+NC EN +L+E
Sbjct: 301 PEELIFHINYLGTDQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNIMQNCMENTAILRE 360
Query: 357 GLVKTGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTV 416
G+ TGRF+I+SK+ GVPLVAFSLKD R+ F+IS+ LRRFGWIVPAYTMP +A+HV V
Sbjct: 361 GIEATGRFEILSKEAGVPLVAFSLKDSGRYTVFDISEHLRRFGWIVPAYTMPANAEHVAV 420
Query: 417 LRVVIREEFSRTLAERLVLDIEKVMYQLDXXXXXXXXXXXXXXXXXX------XKKSELE 470
LRVVIRE+FSR+LAERLV DI K++++LD KKS LE
Sbjct: 421 LRVVIREDFSRSLAERLVSDIVKILHELDAHSAQVLKISSAIAKQQSGDDGVVTKKSVLE 480
Query: 471 TQRSVTEAWKKFVLAKRTNGVC 492
T+R + W+ V K+T G+C
Sbjct: 481 TEREIFAYWRDQVKKKQT-GIC 501
>Os04g0447800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 500
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/447 (73%), Positives = 376/447 (84%), Gaps = 2/447 (0%)
Query: 1 MVLS--KAVSESDMSVHSTFASRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNPRL 58
MVL+ +AV E + + FASRYV+ +PRY + E SI K+AAYQI++DEL+LD +PRL
Sbjct: 1 MVLTHVEAVEEGSEAAAAVFASRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRL 60
Query: 59 NLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETA 118
NLASFVTTWMEPECD+LI+ AINKNY DMDEYPVTTELQNRCVN+IA LF+AP+G+ E A
Sbjct: 61 NLASFVTTWMEPECDRLILEAINKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKA 120
Query: 119 VGVGTVGSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVEL 178
VGVGTVGSSEAIMLAGLAFKRRWQN+RKA GKP DKPNI+TGANVQVCWEKFARYFEVEL
Sbjct: 121 VGVGTVGSSEAIMLAGLAFKRRWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVEL 180
Query: 179 KEVKLRDGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVXXXXXXXXXXXXETGWE 238
KEVKL +G YVMDP KAVDMV+ENTICVAAILGSTL GEFEDV TGW+
Sbjct: 181 KEVKLTEGCYVMDPVKAVDMVDENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWD 240
Query: 239 TPIHVDAASGGFIAPFLYPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPE 298
TPIHVDAASGGFIAPF+YPELEWDFRLP VKSINVSGHKYGLVYAG+GW IWRNKEDLPE
Sbjct: 241 TPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPE 300
Query: 299 ELIFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGL 358
ELIFHINYLG DQPTFTLNFSKGSSQ+IAQYYQ +R GFEGY+++M+NC E+A L+EGL
Sbjct: 301 ELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGL 360
Query: 359 VKTGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLR 418
KTGRF I+SK+EGVPLVAF+ KD + F +S LRR+GWIVPAYTMP +H+TVLR
Sbjct: 361 EKTGRFTIISKEEGVPLVAFTFKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLR 420
Query: 419 VVIREEFSRTLAERLVLDIEKVMYQLD 445
VV+RE+F R LAER + + + ++D
Sbjct: 421 VVVREDFGRPLAERFLSHVRMALDEMD 447
>Os05g0421900 Similar to Gibberellin 20 oxidase 2 (EC 1.14.11.-) (Gibberellin
C-20 oxidase 2) (GA 20-oxidase 2) (Os20ox2) (Semidwarf-1
protein)
Length = 331
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/75 (86%), Positives = 65/75 (86%), Gaps = 4/75 (5%)
Query: 371 EGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVVIREEFSRTLA 430
E PLVAFSLKDRS HDEFEI DMLRRFGWIVPAYTMPPDA VLR VIREEFSRTLA
Sbjct: 152 ERRPLVAFSLKDRSLHDEFEI-DMLRRFGWIVPAYTMPPDA---MVLRFVIREEFSRTLA 207
Query: 431 ERLVLDIEKVMYQLD 445
ERLVLDIEKVM QLD
Sbjct: 208 ERLVLDIEKVMCQLD 222
>Os01g0100900 Pyridoxal-dependent decarboxylase family protein
Length = 539
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 159/375 (42%), Gaps = 40/375 (10%)
Query: 78 AAINKNY--------VDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVGVG-----TV 124
A INK Y + D + +L+ V M A L LG E + G T
Sbjct: 144 ALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAAL----LGIKEKSSGGQICGNMTS 199
Query: 125 GSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKEVKLR 184
G +E+I+LA + R + +K KP +I + ++K A+YF ++++ V +
Sbjct: 200 GGTESILLA-VKTSRDYMRTKKG----ITKPEMIIAESAHSAYDKAAQYFNIKVRRVPV- 253
Query: 185 DGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVXXXXXXXXXXXXETGWETPIHVD 244
+ ++ D + +N NTI + +G + + ++ +HVD
Sbjct: 254 NKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASR------YDICLHVD 307
Query: 245 AASGGFIAPFL----YPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEEL 300
GGF+ PF YP +DF + V SI+ HKYGL G +++N E +
Sbjct: 308 LCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQF 367
Query: 301 IFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVK 360
+ + G + T+ S+ + + + G GY + E + ++ G+
Sbjct: 368 VAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIED 427
Query: 361 TGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQH--VTVLR 418
++ K + + +VAF D FE++D++ GW + A P++ H VT+
Sbjct: 428 IPGLFVIGKPD-MTVVAFG---SDSVDIFEVNDIMSSKGWHLNALQR-PNSLHICVTLQH 482
Query: 419 VVIREEFSRTLAERL 433
VI EEF + L + +
Sbjct: 483 TVIYEEFLKDLKDSV 497
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,464,411
Number of extensions: 632505
Number of successful extensions: 1081
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1072
Number of HSP's successfully gapped: 7
Length of query: 492
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 387
Effective length of database: 11,553,331
Effective search space: 4471139097
Effective search space used: 4471139097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)