Os01g0100900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyridoxal-dependent decarboxylase family protein.
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Os01g0100900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyridoxal-dependent decarboxylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.05 | 0.258 | 12.2 | 0.0903 | 0.364 | -0.884 | -0.362 | -0.273 | 0.196 | 22.3 | 23.1 | 585 | -- | -- |
| 30.08 | 0.255 | 12.2 | 0.0592 | 0.376 | -0.857 | -0.335 | -- | 0.19 | 22.4 | 23 | 530 | -- | -- |
| 30.49 | 0.257 | 12.2 | 0.074 | 0.371 | -0.883 | -- | -0.106 | 0.194 | 22.3 | 23 | 552 | -- | -- |
| 30.5 | 0.257 | 12.2 | 0.0695 | 0.375 | -0.854 | -- | -- | 0.196 | 22.4 | 23 | 544 | -- | -- |
| 38.1 | 0.287 | 12.2 | 0.0284 | -- | -0.897 | -- | 0.051 | 0.133 | -- | 25.3 | 702 | -- | -- |
| 38.99 | 0.293 | 12.2 | 0.268 | 0.444 | -- | -0.357 | -- | 0.324 | 22.1 | -- | -- | -- | -- |
| 39.49 | 0.294 | 12.2 | 0.282 | 0.446 | -- | -- | -- | 0.324 | 22.1 | -- | -- | -- | -- |
| 38.1 | 0.287 | 12.2 | 0.0325 | -- | -0.908 | -- | -- | 0.132 | -- | 25.3 | 702 | -- | -- |
| 30.62 | 0.258 | 12.2 | -- | 0.376 | -0.885 | -- | -- | 0.192 | 22.4 | 23 | 551 | -- | -- |
| 51.48 | 0.335 | 12.2 | 0.288 | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
| 41.59 | 0.302 | 12.2 | -- | 0.447 | -- | -- | -- | 0.293 | 22.1 | -- | -- | -- | -- |
| 38.12 | 0.288 | 12.2 | -- | -- | -0.921 | -- | -- | 0.126 | -- | 25.3 | 703 | -- | -- |
| 53.67 | 0.342 | 12.2 | -- | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 17 | 30.78 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 25 | 30.82 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 86 | 31.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 99 | 31.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 109 | 31.22 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 111 | 31.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 7 |
| 121 | 31.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 128 | 31.28 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 19 |
| 205 | 31.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 209 | 31.46 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 232 | 31.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 247 | 31.54 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 248 | 31.54 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 263 | 31.56 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 283 | 31.60 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 291 | 31.61 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 295 | 31.62 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 334 | 31.67 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 338 | 31.67 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 23 |
| 374 | 31.73 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 377 | 31.73 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 23 |
| 396 | 31.76 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 416 | 31.79 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 421 | 31.80 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 454 | 31.85 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 468 | 31.86 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 629 | 32.05 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 18 |
| 631 | 32.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 652 | 32.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 665 | 32.10 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 16 |
| 751 | 32.19 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 879 | 32.37 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 944 | 32.43 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 960 | 32.45 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 968 | 32.46 | wind | 9 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 969 | 32.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 7 |