BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0100900 Os01g0100900|AY972084
(539 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0100900 Pyridoxal-dependent decarboxylase family protein 1055 0.0
AK069828 503 e-142
Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15) 96 8e-20
Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (... 93 6e-19
Os04g0447800 Glutamate decarboxylase (EC 4.1.1.15) 91 2e-18
Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (... 91 2e-18
Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1... 90 5e-18
>Os01g0100900 Pyridoxal-dependent decarboxylase family protein
Length = 539
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/539 (95%), Positives = 514/539 (95%)
Query: 1 MELAMDFALRLRDAANHHLSRYEPXXXXXXXXXXXXXXXXXXXXXXXXXDRGLRTVLLAL 60
MELAMDFALRLRDAANHHLSRYEP DRGLRTVLLAL
Sbjct: 1 MELAMDFALRLRDAANHHLSRYEPLVLLAAPLLALLAARTLHAAAAAVADRGLRTVLLAL 60
Query: 61 AMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVINDLETLKAR 120
AMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVINDLETLKAR
Sbjct: 61 AMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVINDLETLKAR 120
Query: 121 DVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAA 180
DVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAA
Sbjct: 121 DVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAA 180
Query: 181 LLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKA 240
LLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKA
Sbjct: 181 LLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKA 240
Query: 241 AQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASRY 300
AQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASRY
Sbjct: 241 AQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASRY 300
Query: 301 DICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNH 360
DICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNH
Sbjct: 301 DICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNH 360
Query: 361 EIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKK 420
EIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKK
Sbjct: 361 EIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKK 420
Query: 421 IQRGIEDIPGLFVIGKPDMTVVAFGSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTL 480
IQRGIEDIPGLFVIGKPDMTVVAFGSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTL
Sbjct: 421 IQRGIEDIPGLFVIGKPDMTVVAFGSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTL 480
Query: 481 QHTVIYEEFLKDLKDSVDTVKANPGPISGGRAPIYGAAGKMPDRGMVRELLVEFMDASC 539
QHTVIYEEFLKDLKDSVDTVKANPGPISGGRAPIYGAAGKMPDRGMVRELLVEFMDASC
Sbjct: 481 QHTVIYEEFLKDLKDSVDTVKANPGPISGGRAPIYGAAGKMPDRGMVRELLVEFMDASC 539
>AK069828
Length = 277
Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/274 (90%), Positives = 249/274 (90%)
Query: 1 MELAMDFALRLRDAANHHLSRYEPXXXXXXXXXXXXXXXXXXXXXXXXXDRGLRTVLLAL 60
MELAMDFALRLRDAANHHLSRYEP DRGLRTVLLAL
Sbjct: 1 MELAMDFALRLRDAANHHLSRYEPLVLLAAPLLALLAARTLHAAAAAVADRGLRTVLLAL 60
Query: 61 AMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVINDLETLKAR 120
AMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVINDLETLKAR
Sbjct: 61 AMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVINDLETLKAR 120
Query: 121 DVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAA 180
DVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAA
Sbjct: 121 DVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAA 180
Query: 181 LLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKA 240
LLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKA
Sbjct: 181 LLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKA 240
Query: 241 AQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIM 274
AQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIM
Sbjct: 241 AQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIM 274
>Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 501
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/368 (25%), Positives = 165/368 (44%), Gaps = 30/368 (8%)
Query: 155 HTNPLHQDVFKSVAQLEAEVVAMTAALLG--IKEKSSGGQICGNMTSGGTESILLA---V 209
+ N + D + +L+ V M A L IKE + G T G +E+I+LA
Sbjct: 85 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIKEDETA---IGVGTVGSSEAIMLAGLAF 141
Query: 210 KTSRDYMRTKKG--ITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNK-EFLADVKGFKR 266
K R ++G KP ++ + ++K A+YF ++++ V +++ ++ D
Sbjct: 142 KRKWQNKRKEQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVE 201
Query: 267 CINGNTIMMVGSAPGFPHGLIDPIEELGELASR------YDICLHVDLCLGGFVLPFARK 320
++ NTI + G + ++ L L + +D+ +HVD GGF+ PF
Sbjct: 202 MVDENTICVAAILGSTLTGEFEDVKLLNNLLTEKNKETGWDVPIHVDAASGGFIAPFL-- 259
Query: 321 LGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVTEWTGGLYVS 380
YP +DF + V SI+ HKYGL G V++++ E + + + G +
Sbjct: 260 --YPELEWDFRLPLVKSINVSGHKYGLVYPGVGWVIWRSKEDLPEELIFHINYLGTDQPT 317
Query: 381 PTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGLFVIGKPD-M 439
T+ S+ I + + LG GY + ME + ++ GIE ++ K +
Sbjct: 318 FTLNFSKGSSQIIAQYYQLIRLGFEGYKNIMQNCMENTAILREGIEATGRFEILSKEAGV 377
Query: 440 TVVAFG---SDSVDIFEVNDIMSSKGWHLNALQRP-NSLHICVTLQHTVIYEEFLKDLKD 495
+VAF S +F++++ + GW + A P N+ H+ V VI E+F + L +
Sbjct: 378 PLVAFSLKDSGRYTVFDISEHLRRFGWIVPAYTMPANAEHVAVL--RVVIREDFSRSLAE 435
Query: 496 SV--DTVK 501
+ D VK
Sbjct: 436 RLVSDIVK 443
>Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (EC 4.1.1.15)
Length = 492
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 162/360 (45%), Gaps = 24/360 (6%)
Query: 155 HTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRD 214
+ N + D + +L+ V M A L S + G T G +E+I+LA +
Sbjct: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAV-GVGTVGSSEAIMLAGLAFKR 139
Query: 215 YMRTK-----KGITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNK-EFLADVKGFKRCI 268
+ K K KP ++ + ++K A+YF ++++ V ++ ++ D +
Sbjct: 140 RWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYYVMDPAKAVDMV 199
Query: 269 NGNTIMMVGSAPGFPHGLIDPIEELGELASR------YDICLHVDLCLGGFVLPFARKLG 322
+ NTI + +G + ++ L +L ++ +D +HVD GGF+ PF
Sbjct: 200 DENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDTPIHVDAASGGFIAPFL---- 255
Query: 323 YPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVTEWTGGLYVSPT 382
YP +DF + V SI+ HKYGL G ++++ E + + + G + T
Sbjct: 256 YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEELIFHINYLGADQPTFT 315
Query: 383 IAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGLFVIGKPD-MTV 441
+ S+ + + + LG GY + E + +++G+E ++ K + + +
Sbjct: 316 LNFSKGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLEKTGRFNIVSKDNGVPL 375
Query: 442 VAFG-SDSV--DIFEVNDIMSSKGWHLNALQR-PNSLHICVTLQHTVIYEEFLKDLKDSV 497
VAF DS + FE++D + GW + A P++ H VT+ VI E+F + L + +
Sbjct: 376 VAFSLKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQH--VTVLRVVIREDFSRTLAERL 433
>Os04g0447800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 500
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 156/366 (42%), Gaps = 30/366 (8%)
Query: 146 INKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESI 205
INK Y+ D + +L+ V + A L G + G T G +E+I
Sbjct: 82 INKNYA--------DMDEYPVTTELQNRCVNIIARLFN-APVGDGEKAVGVGTVGSSEAI 132
Query: 206 LLA-VKTSRDYMRTKKGI----TKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNKE-FLA 259
+LA + R + +K KP ++ + ++K A+YF ++++ V + + ++
Sbjct: 133 MLAGLAFKRRWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGCYVM 192
Query: 260 DVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASR------YDICLHVDLCLGGF 313
D ++ NTI + G + + L +L + +D +HVD GGF
Sbjct: 193 DPVKAVDMVDENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWDTPIHVDAASGGF 252
Query: 314 VLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVTEW 373
+ PF YP +DF + V SI+ HKYGL G V+++N E + + +
Sbjct: 253 IAPFI----YPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPEELIFHINY 308
Query: 374 TGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGLFV 433
G + T+ S+ I + LG GY + ME ++ ++ G+E +
Sbjct: 309 LGADQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGLEKTGRFTI 368
Query: 434 IGKPD-MTVVAF---GSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHTVIYEEF 489
I K + + +VAF F ++ + GW + A P +L +T+ V+ E+F
Sbjct: 369 ISKEEGVPLVAFTFKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALE-HMTVLRVVVREDF 427
Query: 490 LKDLKD 495
+ L +
Sbjct: 428 GRPLAE 433
>Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (EC 4.1.1.15)
Length = 492
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 165/375 (44%), Gaps = 40/375 (10%)
Query: 144 ALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAAL----LGIKEKSSGGQICGNMTS 199
A INK Y + D + +L+ V M A L LG E + G G T
Sbjct: 78 AAINKNY--------VDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVG---VG--TV 124
Query: 200 GGTESILLA-VKTSRDYMRTKKG----ITKPEMIIAESAHSAYDKAAQYFNIKVRRVPV- 253
G +E+I+LA + R + +K KP +I + ++K A+YF ++++ V +
Sbjct: 125 GSSEAIMLAGLAFKRRWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKEVKLR 184
Query: 254 NKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASR------YDICLHVD 307
+ ++ D + +N NTI + +G + ++ L +L + ++ +HVD
Sbjct: 185 DGYYVMDPEKAVDMVNENTICVAAILGSTLNGEFEDVKLLNDLLDKKNKETGWETPIHVD 244
Query: 308 LCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQF 367
GGF+ PF YP +DF + V SI+ HKYGL G +++N E +
Sbjct: 245 AASGGFIAPFL----YPELEWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEEL 300
Query: 368 VAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIED 427
+ + G + T+ S+ + + + G GY + E + ++ G+
Sbjct: 301 IFHINYLGTDQPTFTLNFSKGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVK 360
Query: 428 IPGLFVIGKPD-MTVVAFG---SDSVDIFEVNDIMSSKGWHLNALQR-PNSLHICVTLQH 482
++ K + + +VAF D FE++D++ GW + A P++ H VT+
Sbjct: 361 TGRFDIVSKDEGVPLVAFSLKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQH--VTVLR 418
Query: 483 TVIYEEFLKDLKDSV 497
VI EEF + L + +
Sbjct: 419 VVIREEFSRTLAERL 433
>Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)
Length = 484
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 165/373 (44%), Gaps = 32/373 (8%)
Query: 144 ALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTE 203
A INK Y + D + +L+ V M A L + G T G +E
Sbjct: 77 AAINKNY--------VDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETAV-GVGTVGSSE 127
Query: 204 SILLA----VKTSRDYMRTK-KGITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNK-EF 257
+I+LA + ++ M+ + K KP ++ + ++K A+YF ++++ V + + +
Sbjct: 128 AIMLAGLAFKRKWQNRMKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTQGYY 187
Query: 258 LADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASR------YDICLHVDLCLG 311
+ + + ++ NTI + +G + ++ L +L + ++ +HVD G
Sbjct: 188 VMNPEKAVEMVDENTICVAAILGSTLNGEFEDVKMLNDLLTAKNAETGWNTPIHVDAASG 247
Query: 312 GFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVT 371
GF+ PF YP +DF + V SI+ HKYGL G V+++N E + +
Sbjct: 248 GFIAPFI----YPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPDELIFHI 303
Query: 372 EWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGL 431
+ G + T+ S+ I + + LG GY + + + + ++ GIE
Sbjct: 304 NYLGADQPTFTLNFSKGSNQIIAQYYQLIRLGFEGYKDIMQNCRDNATVLREGIEKTGHF 363
Query: 432 FVIGKPD-MTVVAFG---SDSVDIFEVNDIMSSKGWHLNALQRP-NSLHICVTLQHTVIY 486
V+ K + +VAF S +FEV + + GW + A P ++ H+ V VI
Sbjct: 364 DVVSKDSGVPLVAFSLKDSSRYTVFEVAESLRRFGWIVPAYTMPADAEHVAV--MRVVIR 421
Query: 487 EEFLKDLKDSVDT 499
E+F + L + + T
Sbjct: 422 EDFSRGLAERLIT 434
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,389,945
Number of extensions: 716338
Number of successful extensions: 1498
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 7
Length of query: 539
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 433
Effective length of database: 11,501,117
Effective search space: 4979983661
Effective search space used: 4979983661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)