Os04g0447400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0447400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.81	(0.0277)	R²	:	0.229
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	4.29	(0.371)	R²_dE	:	0.227	R²_E	:	0.228
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0313	(0.0583)	R²_dN8	:	0.00063	R²_N8	:	0.00124
σ	:	0.52
deviance	:	124.52
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.6457
memory length	:	18
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	7.84
open length of G	:	0.85

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
121.79	0.519	2.81	-0.0246	0.0551	2.26	0.893	14.8	-0.0384	6.13	0.8001	10	7.02	0.994
122.56	0.516	2.8	0.0108	0.0406	4.09	0.824	--	-0.027	6.32	0.5001	11	7.83	0.151
123.72	0.518	2.81	-0.0136	0.0622	2.26	--	15.2	-0.0411	7.43	0.7943	10	7.02	1.67
124.16	0.519	2.82	-0.0782	0.0622	4.27	--	--	-0.0409	7.43	0.6366	19	7.83	0.662
123.92	0.518	2.81	-0.0127	--	2.29	--	15.2	-0.04	--	0.7998	10	7	1.66
157.36	0.588	2.82	-0.0609	0.129	--	1.07	--	-0.0595	6.52	--	--	--	--
160.13	0.593	2.82	-0.0445	0.137	--	--	--	-0.0621	7.56	--	--	--	--
124.36	0.519	2.82	-0.0777	--	4.3	--	--	-0.0399	--	0.7176	10	6.61	1.41
124.32	0.519	2.81	--	0.0616	4.26	--	--	-0.0322	7.52	0.6703	18	7.84	0.806
161.13	0.593	2.82	-0.0425	--	--	--	--	-0.06	--	--	--	--	--
160.18	0.592	2.82	--	0.137	--	--	--	-0.0572	7.59	--	--	--	--
124.52	0.52	2.81	--	--	4.29	--	--	-0.0313	--	0.6457	18	7.84	0.85
161.18	0.593	2.82	--	--	--	--	--	-0.0553	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	122.54	wind	1	10	< th	dose dependent	rect.	7	1
2	123.79	wind	1	10	< th	dose independent	rect.	7	1
5	126.19	radiation	30	10	> th	dose dependent	rect.	7	1
37	126.33	radiation	30	10	> th	dose independent	rect.	7	2
149	131.82	humidity	80	10	< th	dose dependent	rect.	3	5
164	135.06	atmosphere	1000	10	< th	dose dependent	rect.	6	2
166	135.11	atmosphere	1000	10	< th	dose independent	rect.	6	2
171	135.53	atmosphere	1000	90	< th	dose independent	rect.	6	1
192	135.89	humidity	70	10	< th	dose independent	rect.	7	1
252	135.89	humidity	70	10	< th	dose dependent	rect.	7	1
343	139.16	humidity	90	10	< th	dose dependent	rect.	4	1
346	139.24	temperature	25	30	> th	dose dependent	rect.	7	1
353	139.81	humidity	80	90	< th	dose independent	rect.	2	2
355	139.82	humidity	80	90	< th	dose dependent	rect.	2	2
383	140.40	humidity	80	10	< th	dose independent	rect.	3	1
404	140.59	temperature	25	90	> th	dose dependent	rect.	4	4
425	141.35	radiation	10	90	> th	dose dependent	rect.	6	1
446	141.58	atmosphere	1000	270	< th	dose independent	rect.	4	1
447	141.58	atmosphere	1000	270	< th	dose dependent	rect.	4	1
486	142.80	wind	1	30	< th	dose dependent	rect.	7	15
493	142.96	temperature	25	30	> th	dose independent	rect.	7	1
598	144.79	temperature	20	10	< th	dose independent	rect.	19	1
605	144.79	temperature	20	10	< th	dose dependent	rect.	19	1
625	144.99	wind	3	10	> th	dose dependent	rect.	2	2
628	145.06	humidity	90	90	> th	dose independent	rect.	18	1
637	145.23	humidity	90	90	> th	dose dependent	rect.	18	1
665	145.44	temperature	25	30	> th	dose dependent	rect.	22	10
721	146.33	temperature	25	90	> th	dose independent	rect.	4	4
799	147.20	wind	1	30	< th	dose independent	rect.	7	15
887	148.29	humidity	80	270	< th	dose dependent	rect.	24	4
892	148.32	temperature	20	90	< th	dose dependent	rect.	2	1
978	149.19	wind	3	10	< th	dose dependent	rect.	20	1