Os04g0447800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutamate decarboxylase (EC 4.1.1.15).
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Os04g0447800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutamate decarboxylase (EC 4.1.1.15).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 613.2 | 1.16 | 6.26 | -7.79 | 2.09 | 2.36 | -1.17 | -4.52 | -1.85 | 8.61 | 21.05 | 959 | 6.9 | -- |
| 623.69 | 1.16 | 6.15 | -6.72 | 2.09 | 2.16 | -1.23 | -- | -1.55 | 8.78 | 19.32 | 951 | 7.65 | -- |
| 617.45 | 1.16 | 6.26 | -7.82 | 2.12 | 2.31 | -- | -4.43 | -1.84 | 8.56 | 21 | 997 | 7.29 | -- |
| 628.28 | 1.17 | 6.14 | -6.77 | 2.1 | 2.18 | -- | -- | -1.53 | 8.8 | 19.1 | 935 | 7.63 | -- |
| 635.53 | 1.17 | 6.22 | -6.91 | -- | 4.06 | -- | -1.32 | -1.59 | -- | 5.036 | 932 | 5.65 | -- |
| 717.82 | 1.26 | 6.04 | -6.21 | 2.59 | -- | -1.06 | -- | -1.12 | 7.59 | -- | -- | -- | -- |
| 721 | 1.26 | 6.03 | -6.24 | 2.59 | -- | -- | -- | -1.12 | 7.58 | -- | -- | -- | -- |
| 640.64 | 1.18 | 6.2 | -6.83 | -- | 3.96 | -- | -- | -1.55 | -- | 1.056 | 973 | 6.11 | -- |
| 1698.16 | 1.93 | 5.87 | -- | 2.48 | -2.04 | -- | -- | -0.393 | 8.59 | 26.7 | 2 | 16.2 | -- |
| 1082.23 | 1.54 | 6.1 | -6.2 | -- | -- | -- | -- | -1.08 | -- | -- | -- | -- | -- |
| 1746.25 | 1.95 | 5.88 | -- | 2.54 | -- | -- | -- | -0.424 | 7.75 | -- | -- | -- | -- |
| 1733.37 | 1.95 | 5.91 | -- | -- | -3.05 | -- | -- | -0.257 | -- | 8.843 | 3 | 9.62 | -- |
| 2096.19 | 2.14 | 5.94 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 582.89 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 3 | 584.87 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 13 | 589.73 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 14 | 590.12 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 18 | 590.74 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 75 | 595.43 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 110 | 597.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 113 | 598.14 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 126 | 598.83 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 130 | 599.12 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 133 | 599.19 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 149 | 599.27 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 152 | 599.37 | radiation | 10 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 185 | 600.03 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 245 | 600.63 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 272 | 601.85 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 306 | 602.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 315 | 602.73 | radiation | 20 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 360 | 603.08 | radiation | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 383 | 603.57 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 456 | 604.41 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 457 | 604.41 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 465 | 604.43 | radiation | 20 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 489 | 604.59 | wind | 3 | 43200 | > th | dose dependent | sin | 18 | NA |
| 545 | 605.09 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 609 | 605.77 | radiation | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 636 | 605.96 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 646 | 605.99 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 648 | 606.00 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 818 | 607.05 | radiation | 20 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 853 | 607.38 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 858 | 607.45 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 910 | 608.14 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |