BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0447800 Os04g0447800|AB056061
(500 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0447800 Glutamate decarboxylase (EC 4.1.1.15) 998 0.0
Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15) 728 0.0
Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1... 726 0.0
Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (... 725 0.0
Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (... 707 0.0
Os01g0100900 Pyridoxal-dependent decarboxylase family protein 92 1e-18
>Os04g0447800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 500
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/500 (96%), Positives = 484/500 (96%)
Query: 1 MVLTHXXXXXXXXXXXXXXXXSRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRL 60
MVLTH SRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRL
Sbjct: 1 MVLTHVEAVEEGSEAAAAVFASRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRL 60
Query: 61 NLASFVTTWMEPECDRLILEAINKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKA 120
NLASFVTTWMEPECDRLILEAINKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKA
Sbjct: 61 NLASFVTTWMEPECDRLILEAINKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKA 120
Query: 121 VGVGTVGSSEAIMLAGLAFKRRWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVEL 180
VGVGTVGSSEAIMLAGLAFKRRWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVEL
Sbjct: 121 VGVGTVGSSEAIMLAGLAFKRRWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVEL 180
Query: 181 KEVKLTEGCYVMDPVKAVDMVDENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWD 240
KEVKLTEGCYVMDPVKAVDMVDENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWD
Sbjct: 181 KEVKLTEGCYVMDPVKAVDMVDENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWD 240
Query: 241 TPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPE 300
TPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPE
Sbjct: 241 TPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPE 300
Query: 301 ELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGL 360
ELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGL
Sbjct: 301 ELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGL 360
Query: 361 EKTGRFTIISKEEGVPLVAFTFKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLR 420
EKTGRFTIISKEEGVPLVAFTFKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLR
Sbjct: 361 EKTGRFTIISKEEGVPLVAFTFKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLR 420
Query: 421 VVVREDFGRPLAERFLSHVRMALDEMDLAARAPVPRVQLTIELGPARTAGEEASIRVVKS 480
VVVREDFGRPLAERFLSHVRMALDEMDLAARAPVPRVQLTIELGPARTAGEEASIRVVKS
Sbjct: 421 VVVREDFGRPLAERFLSHVRMALDEMDLAARAPVPRVQLTIELGPARTAGEEASIRVVKS 480
Query: 481 EAVPVRKSVPLVAGKTKGVC 500
EAVPVRKSVPLVAGKTKGVC
Sbjct: 481 EAVPVRKSVPLVAGKTKGVC 500
>Os08g0465800 Glutamate decarboxylase (EC 4.1.1.15)
Length = 501
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/479 (72%), Positives = 396/479 (82%), Gaps = 1/479 (0%)
Query: 22 SRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRLNLASFVTTWMEPECDRLILEA 81
SRYV+DP+PR+ + E+SI ++AAYQI++DEL+LD +PRLNLASFVTTWMEPECD+LI+++
Sbjct: 24 SRYVRDPLPRFRMPEQSIPREAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDS 83
Query: 82 INKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKAVGVGTVGSSEAIMLAGLAFKR 141
+NKNY DMDEYPVTTELQNRCVN+IA LFNAP+ + E A+GVGTVGSSEAIMLAGLAFKR
Sbjct: 84 VNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIKEDETAIGVGTVGSSEAIMLAGLAFKR 143
Query: 142 RWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGCYVMDPVKAVDMV 201
+WQN+RK GKP DKPNIVTGANVQVCWEKFARYFEVELKEVKL+EG YVMDPVKAV+MV
Sbjct: 144 KWQNKRKEQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMV 203
Query: 202 DENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWDTPIHVDAASGGFIAPFIYPEL 261
DENTICVAAILGSTLTGEFEDV+ LN+LL KNK TGWD PIHVDAASGGFIAPF+YPEL
Sbjct: 204 DENTICVAAILGSTLTGEFEDVKLLNNLLTEKNKETGWDVPIHVDAASGGFIAPFLYPEL 263
Query: 262 EWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFS 321
EWDFRLPLVKSINVSGHKYGLVY GVGWVIWR+KEDLPEELIFHINYLG DQPTFTLNFS
Sbjct: 264 EWDFRLPLVKSINVSGHKYGLVYPGVGWVIWRSKEDLPEELIFHINYLGTDQPTFTLNFS 323
Query: 322 KGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGLEKTGRFTIISKEEGVPLVAFT 381
KGSSQIIAQYYQ +RLGFEGYK++M+NCME+ LREG+E TGRF I+SKE GVPLVAF+
Sbjct: 324 KGSSQIIAQYYQLIRLGFEGYKNIMQNCMENTAILREGIEATGRFEILSKEAGVPLVAFS 383
Query: 382 FKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLRVVVREDFGRPLAERFLSHVRM 441
KD F +S LRR+GWIVPAYTMPA EH+ VLRVV+REDF R LAER +S +
Sbjct: 384 LKDSGRYTVFDISEHLRRFGWIVPAYTMPANAEHVAVLRVVIREDFSRSLAERLVSDIVK 443
Query: 442 ALDEMDLAARAPVPRVQLTIELGPARTAGEEASIRVVKSEAVPVRKSVPLVAGKTKGVC 500
L E+D A A V ++ I + G V+++E V K G+C
Sbjct: 444 ILHELD-AHSAQVLKISSAIAKQQSGDDGVVTKKSVLETEREIFAYWRDQVKKKQTGIC 501
>Os04g0447400 Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)
Length = 484
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/426 (78%), Positives = 378/426 (88%)
Query: 22 SRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRLNLASFVTTWMEPECDRLILEA 81
SRYV+ +PR+ + E+SI KDAAYQI++DEL+LD +PRLNLASFVTTWMEPECD+L++ A
Sbjct: 19 SRYVRTALPRFRMPEKSIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAA 78
Query: 82 INKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKAVGVGTVGSSEAIMLAGLAFKR 141
INKNY DMDEYPVTTELQNRCVN+IA LFNAP+GD E AVGVGTVGSSEAIMLAGLAFKR
Sbjct: 79 INKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETAVGVGTVGSSEAIMLAGLAFKR 138
Query: 142 RWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGCYVMDPVKAVDMV 201
+WQNR KA GKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLT+G YVM+P KAV+MV
Sbjct: 139 KWQNRMKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTQGYYVMNPEKAVEMV 198
Query: 202 DENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWDTPIHVDAASGGFIAPFIYPEL 261
DENTICVAAILGSTL GEFEDV+ LNDLL AKN TGW+TPIHVDAASGGFIAPFIYPEL
Sbjct: 199 DENTICVAAILGSTLNGEFEDVKMLNDLLTAKNAETGWNTPIHVDAASGGFIAPFIYPEL 258
Query: 262 EWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFS 321
EWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLP+ELIFHINYLGADQPTFTLNFS
Sbjct: 259 EWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPDELIFHINYLGADQPTFTLNFS 318
Query: 322 KGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGLEKTGRFTIISKEEGVPLVAFT 381
KGS+QIIAQYYQ +RLGFEGYK +M+NC ++A LREG+EKTG F ++SK+ GVPLVAF+
Sbjct: 319 KGSNQIIAQYYQLIRLGFEGYKDIMQNCRDNATVLREGIEKTGHFDVVSKDSGVPLVAFS 378
Query: 382 FKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLRVVVREDFGRPLAERFLSHVRM 441
KD + F ++ LRR+GWIVPAYTMPA EH+ V+RVV+REDF R LAER ++ +
Sbjct: 379 LKDSSRYTVFEVAESLRRFGWIVPAYTMPADAEHVAVMRVVIREDFSRGLAERLITDLTK 438
Query: 442 ALDEMD 447
+ +MD
Sbjct: 439 TVADMD 444
>Os03g0720300 Similar to Glutamate decarboxylase isozyme 1 (EC 4.1.1.15)
Length = 492
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/480 (72%), Positives = 392/480 (81%), Gaps = 8/480 (1%)
Query: 22 SRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRLNLASFVTTWMEPECDRLILEA 81
SRYV+ +PR+ + E+SI K+AAYQI++DEL+LD +PRLNLASFVTTWMEPECD+LI +
Sbjct: 20 SRYVRTSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIQAS 79
Query: 82 INKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKAVGVGTVGSSEAIMLAGLAFKR 141
+NKNY DMDEYPVTTELQNRCVN+IA LFNAP+GD E AVGVGTVGSSEAIMLAGLAFKR
Sbjct: 80 VNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKR 139
Query: 142 RWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGCYVMDPVKAVDMV 201
RWQN+ KAAGKP DKPNIVTGANVQVCWEKFARYFEVELKEVKL++G YVMDP KAVDMV
Sbjct: 140 RWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYYVMDPAKAVDMV 199
Query: 202 DENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWDTPIHVDAASGGFIAPFIYPEL 261
DENTICVAAILGSTL GEFEDV+ LNDLL KN TGWDTPIHVDAASGGFIAPF+YPEL
Sbjct: 200 DENTICVAAILGSTLNGEFEDVKLLNDLLTKKNAETGWDTPIHVDAASGGFIAPFLYPEL 259
Query: 262 EWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFS 321
EWDFRLPLVKSINVSGHKYGLVYAG+GW IWR+KEDLPEELIFHINYLGADQPTFTLNFS
Sbjct: 260 EWDFRLPLVKSINVSGHKYGLVYAGIGWCIWRSKEDLPEELIFHINYLGADQPTFTLNFS 319
Query: 322 KGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGLEKTGRFTIISKEEGVPLVAFT 381
KGSSQ+IAQYYQ +RLGFEGYK++M+NC E+A L++GLEKTGRF I+SK+ GVPLVAF+
Sbjct: 320 KGSSQVIAQYYQLIRLGFEGYKNIMENCQENAMVLKQGLEKTGRFNIVSKDNGVPLVAFS 379
Query: 382 FKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLRVVVREDFGRPLAERFLSHVRM 441
KD A F +S LRR+GWIVPAYTMP +H+TVLRVV+REDF R LAER + V
Sbjct: 380 LKDSARHNEFEISDFLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVLDVEK 439
Query: 442 ALDEMD-LAARAPVPRVQLTIELGPARTAGEEASIRVVKSEAVPVRKSVPLVAGKTKGVC 500
L E+D L AR R ++ E + + K L KT GVC
Sbjct: 440 VLHELDALPARVVANGGDAAAASASEREMEKQ-------REVISLWKRAVLAKKKTNGVC 492
>Os03g0236200 Similar to Glutamate decarboxylase isozyme 3 (EC 4.1.1.15)
Length = 492
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/479 (70%), Positives = 394/479 (82%), Gaps = 6/479 (1%)
Query: 22 SRYVQDPVPRYELGERSISKDAAYQIVHDELLLDSSPRLNLASFVTTWMEPECDRLILEA 81
SRYV+ +PRY + E SI K+AAYQI++DEL+LD +PRLNLASFVTTWMEPECD+LI+ A
Sbjct: 20 SRYVRASLPRYRMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAA 79
Query: 82 INKNYADMDEYPVTTELQNRCVNIIARLFNAPVGDGEKAVGVGTVGSSEAIMLAGLAFKR 141
INKNY DMDEYPVTTELQNRCVN+IA LF+AP+G+ E AVGVGTVGSSEAIMLAGLAFKR
Sbjct: 80 INKNYVDMDEYPVTTELQNRCVNMIAHLFHAPLGEDETAVGVGTVGSSEAIMLAGLAFKR 139
Query: 142 RWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGCYVMDPVKAVDMV 201
RWQN+RKA GKP DKPNI+TGANVQVCWEKFARYFEVELKEVKL +G YVMDP KAVDMV
Sbjct: 140 RWQNKRKAEGKPFDKPNIITGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVDMV 199
Query: 202 DENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWDTPIHVDAASGGFIAPFIYPEL 261
+ENTICVAAILGSTL GEFEDV+ LNDLL KNK TGW+TPIHVDAASGGFIAPF+YPEL
Sbjct: 200 NENTICVAAILGSTLNGEFEDVKLLNDLLDKKNKETGWETPIHVDAASGGFIAPFLYPEL 259
Query: 262 EWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFS 321
EWDFRLP VKSINVSGHKYGLVYAG+GW IWRNKEDLPEELIFHINYLG DQPTFTLNFS
Sbjct: 260 EWDFRLPWVKSINVSGHKYGLVYAGIGWCIWRNKEDLPEELIFHINYLGTDQPTFTLNFS 319
Query: 322 KGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGLEKTGRFTIISKEEGVPLVAFT 381
KGSSQ+IAQYYQ +R GFEGY+++M+NC E+A L+EGL KTGRF I+SK+EGVPLVAF+
Sbjct: 320 KGSSQVIAQYYQLIRHGFEGYRNIMENCHENAMVLKEGLVKTGRFDIVSKDEGVPLVAFS 379
Query: 382 FKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALEHMTVLRVVVREDFGRPLAERFLSHVRM 441
KD + F +S LRR+GWIVPAYTMP +H+TVLRVV+RE+F R LAER + +
Sbjct: 380 LKDRSRHDEFEISDMLRRFGWIVPAYTMPPDAQHVTVLRVVIREEFSRTLAERLVLDIEK 439
Query: 442 ALDEMDLAARAPVPRVQLTIELGPARTAGEEASIRVVKSEAVPVRKSVPLVAGKTKGVC 500
+ ++D A R+ + P +++ + +S +K V +A +T GVC
Sbjct: 440 VMYQLD----ALPSRLMPPVPPAPLLVVAKKSELETQRSVTEAWKKFV--LAKRTNGVC 492
>Os01g0100900 Pyridoxal-dependent decarboxylase family protein
Length = 539
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 156/366 (42%), Gaps = 30/366 (8%)
Query: 82 INKNYA--------DMDEYPVTTELQNRCVNIIARLFN-APVGDGEKAVGVGTVGSSEAI 132
INK Y+ D + +L+ V + A L G + G T G +E+I
Sbjct: 146 INKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESI 205
Query: 133 MLAGLAFKRRWQNRRKAAGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGCYVM 192
+LA + R + +K KP ++ + ++K A+YF ++++ V + + ++
Sbjct: 206 LLA-VKTSRDYMRTKKGI----TKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNKE-FLA 259
Query: 193 DPVKAVDMVDENTICVAAILGSTLTGEFEDVRRLNDLLAAKNKRTGWDTPIHVDAASGGF 252
D ++ NTI + G + + L +L + +D +HVD GGF
Sbjct: 260 DVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASR------YDICLHVDLCLGGF 313
Query: 253 IAPFI----YPELEWDFRLPLVKSINVSGHKYGLVYAGVGWVIWRNKEDLPEELIFHINY 308
+ PF YP +DF + V SI+ HKYGL G V+++N E + + +
Sbjct: 314 VLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVTEW 373
Query: 309 LGADQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKSVMKNCMESARTLREGLEKTGRFTI 368
G + T+ S+ I + LG GY + ME ++ ++ G+E +
Sbjct: 374 TGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGIEDIPGLFV 433
Query: 369 ISKEEGVPLVAFTFKDGAGAQAFRLSSGLRRYGWIVPAYTMPAALE-HMTVLRVVVREDF 427
I K + + +VAF F ++ + GW + A P +L +T+ V+ E+F
Sbjct: 434 IGKPD-MTVVAF---GSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHTVIYEEF 489
Query: 428 GRPLAE 433
+ L +
Sbjct: 490 LKDLKD 495
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,223,800
Number of extensions: 702634
Number of successful extensions: 1363
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1361
Number of HSP's successfully gapped: 7
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)