BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0364600 Os05g0364600|AK071503
(294 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0364600 Similar to ASF/SF2-like pre-mRNA splicing fact... 336 1e-92
Os07g0673500 Similar to ASF/SF2-like pre-mRNA splicing fact... 299 2e-81
Os03g0344100 Similar to ASF/SF2-like pre-mRNA splicing fact... 283 7e-77
Os01g0316600 Similar to ASF/SF2-like pre-mRNA splicing fact... 197 7e-51
Os01g0155600 Similar to Splicing factor RSZ33 68 7e-12
Os03g0285900 Similar to Splicing factor RSZ33 68 9e-12
Os05g0120100 Similar to Splicing factor RSZ33 66 3e-11
>Os05g0364600 Similar to ASF/SF2-like pre-mRNA splicing factor SRP31\'\'\'
Length = 294
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/188 (88%), Positives = 166/188 (88%)
Query: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQD 60
MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQD
Sbjct: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQD 60
Query: 61 AIYGRHGYDFDGHRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXTDYRVMVTGLPSSAS 120
AIYGRHGYDFDGHRLRVELAHGG TDYRVMVTGLPSSAS
Sbjct: 61 AIYGRHGYDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGLPSSAS 120
Query: 121 WQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIR 180
WQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIR
Sbjct: 121 WQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIR 180
Query: 181 VREYDSAK 188
VREYDSAK
Sbjct: 181 VREYDSAK 188
>Os07g0673500 Similar to ASF/SF2-like pre-mRNA splicing factor SRP32\'\'
Length = 296
Score = 299 bits (766), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/185 (78%), Positives = 157/185 (84%)
Query: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQD 60
MSRR SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPG+AFVEFEDPRDA+D
Sbjct: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAED 60
Query: 61 AIYGRHGYDFDGHRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXTDYRVMVTGLPSSAS 120
AI GR GY+FDG+RLRVELAHGG T+YRV+VTGLPSSAS
Sbjct: 61 AIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSAS 120
Query: 121 WQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIR 180
WQDLKDHMR AGDVC+S+VYREGG TIGIVDYTNY+DMK AIRKLDDSEF+NAFS+AYIR
Sbjct: 121 WQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIR 180
Query: 181 VREYD 185
V+EYD
Sbjct: 181 VKEYD 185
>Os03g0344100 Similar to ASF/SF2-like pre-mRNA splicing factor SRP32\'\'
Length = 264
Score = 283 bits (725), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 141/189 (74%), Positives = 155/189 (82%), Gaps = 3/189 (1%)
Query: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQD 60
MSRR SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDA++
Sbjct: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEE 60
Query: 61 AIYGRHGYDFDGHRLRVELAHGGXXXXXXXX---XXXXXXXXXXXXXXTDYRVMVTGLPS 117
A GR GY+FDGHRLRVE AHGG ++YRV+VTGLPS
Sbjct: 61 ACAGRDGYNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPS 120
Query: 118 SASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRA 177
SASWQDLKDHMR+AGDVCFS+VYREGG T+GIVDYTNY+DMK AI+KLDDSEFRNAFS+
Sbjct: 121 SASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEFRNAFSKG 180
Query: 178 YIRVREYDS 186
+IRV+EYD
Sbjct: 181 HIRVKEYDG 189
>Os01g0316600 Similar to ASF/SF2-like pre-mRNA splicing factor SRP30\'
Length = 178
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 101/136 (74%), Positives = 106/136 (77%), Gaps = 2/136 (1%)
Query: 52 FEDPRDAQDAIYGRHGYDFDGHRLRVELAHGGXXXXXXXXX--XXXXXXXXXXXXXTDYR 109
FEDPRDA DAI GR GY+FDG+RLRVELAHGG ++YR
Sbjct: 1 FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYR 60
Query: 110 VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSE 169
VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYRE GAT+GIVDYT YEDMK AIRKLDDSE
Sbjct: 61 VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE 120
Query: 170 FRNAFSRAYIRVREYD 185
FRNAFSRAYIRVREYD
Sbjct: 121 FRNAFSRAYIRVREYD 136
>Os01g0155600 Similar to Splicing factor RSZ33
Length = 324
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGRHGY 68
+YVG L R R++EDLF +YGR+ +D+K +AFVEF D RDA +A Y G
Sbjct: 20 LYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHE-----FAFVEFSDARDADEARYNLDGR 74
Query: 69 DFDGHRLRVELAHG 82
DFDG R+ VE A G
Sbjct: 75 DFDGSRMIVEFAKG 88
>Os03g0285900 Similar to Splicing factor RSZ33
Length = 330
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGR 65
S +YVG L R R++E LF +YGRI +++LK YAF+EF DPRDA +A Y
Sbjct: 10 STRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKR-----DYAFIEFSDPRDADEARYNL 64
Query: 66 HGYDFDGHRLRVELAHG 82
G D DG R+ VE A G
Sbjct: 65 DGRDVDGSRILVEFAKG 81
>Os05g0120100 Similar to Splicing factor RSZ33
Length = 323
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGR 65
S +YVG L R R++E F +YGRI +++LK YAF+EF DPRDA++A Y
Sbjct: 10 STRLYVGRLSSRTRSRDLEYHFSRYGRIREVELKR-----DYAFIEFSDPRDAEEARYNL 64
Query: 66 HGYDFDGHRLRVELAHG 82
G D DG R+ VE A G
Sbjct: 65 DGRDVDGSRILVEFAKG 81
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,414,098
Number of extensions: 278255
Number of successful extensions: 945
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 7
Length of query: 294
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 194
Effective length of database: 11,814,401
Effective search space: 2291993794
Effective search space used: 2291993794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)