Os01g0316600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ASF/SF2-like pre-mRNA splicing factor SRP30'.
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Os01g0316600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ASF/SF2-like pre-mRNA splicing factor SRP30'.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.98 | 0.634 | 9.92 | -2.89 | 4.49 | 1.75 | 0.348 | -1.65 | -0.31 | 7.9 | 20.97 | 8 | -- | -- |
| 184.21 | 0.637 | 9.89 | -2.61 | 4.48 | 1.65 | 0.197 | -- | -0.224 | 7.92 | 20.8 | 7 | -- | -- |
| 182.24 | 0.634 | 9.92 | -2.86 | 4.48 | 1.76 | -- | -1.56 | -0.301 | 7.9 | 21 | 7 | -- | -- |
| 184.32 | 0.636 | 9.89 | -2.6 | 4.48 | 1.65 | -- | -- | -0.224 | 7.92 | 20.8 | 7 | -- | -- |
| 1270.01 | 1.67 | 10 | -2.8 | -- | 1.79 | -- | -1.39 | -0.229 | -- | 17.4 | 3 | -- | -- |
| 225.1 | 0.703 | 9.82 | -2.27 | 4.45 | -- | 0.0986 | -- | 0.0504 | 8.45 | -- | -- | -- | -- |
| 225.13 | 0.703 | 9.82 | -2.27 | 4.45 | -- | -- | -- | 0.0504 | 8.45 | -- | -- | -- | -- |
| 1271.33 | 1.66 | 10 | -2.61 | -- | 2 | -- | -- | -0.173 | -- | 11.97 | 2 | -- | -- |
| 289.76 | 0.793 | 9.68 | -- | 4.43 | -1.32 | -- | -- | 0.716 | 8.43 | 14.5 | 47520 | -- | -- |
| 1328.98 | 1.7 | 9.94 | -2.24 | -- | -- | -- | -- | 0.0947 | -- | -- | -- | -- | -- |
| 360.49 | 0.888 | 9.77 | -- | 4.44 | -- | -- | -- | 0.303 | 8.48 | -- | -- | -- | -- |
| 1386.23 | 1.73 | 9.79 | -- | -- | -1.36 | -- | -- | 0.774 | -- | 14.9 | 47520 | -- | -- |
| 1461.85 | 1.78 | 9.89 | -- | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 175.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 2 | 178.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 4 | 178.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 15 | 181.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 25 | 182.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 48 | 183.90 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 66 | 184.81 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 69 | 184.84 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 71 | 184.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 78 | 185.21 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 80 | 185.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 118 | 186.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 126 | 186.73 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 16 |
| 137 | 186.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 139 | 186.95 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 23 |
| 151 | 187.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 166 | 187.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 170 | 187.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 202 | 187.95 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 213 | 188.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 224 | 188.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 243 | 188.67 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 20 |
| 258 | 188.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 354 | 189.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 381 | 190.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 457 | 191.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 471 | 191.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 472 | 191.15 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 22 |
| 478 | 191.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 544 | 191.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 554 | 191.93 | temperature | 25 | 30 | > th | dose independent | rect. | 17 | 23 |
| 577 | 192.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 722 | 192.88 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 748 | 193.06 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 753 | 193.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 774 | 193.26 | temperature | 25 | 10 | < th | dose independent | rect. | 24 | 20 |
| 781 | 193.30 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 20 |
| 799 | 193.41 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 16 |
| 855 | 193.77 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 23 |
| 883 | 193.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 886 | 193.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 902 | 194.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 924 | 194.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 949 | 194.11 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 973 | 194.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 997 | 194.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |