BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0316600 Os01g0316600|AK103534
         (178 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0316600  Similar to ASF/SF2-like pre-mRNA splicing fact...   261   3e-70
Os05g0364600  Similar to ASF/SF2-like pre-mRNA splicing fact...   197   4e-51
Os07g0673500  Similar to ASF/SF2-like pre-mRNA splicing fact...   192   1e-49
Os03g0344100  Similar to ASF/SF2-like pre-mRNA splicing fact...   184   4e-47

>Os01g0316600 Similar to ASF/SF2-like pre-mRNA splicing factor SRP30\'
          Length = 178

 Score =  261 bits (666), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 135/178 (75%)

Query: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQXXXXXXXXXXXXXXXXXXXXXXXXX 60
           FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQ                         
Sbjct: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYR 60

Query: 61  VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE 120
           VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE
Sbjct: 61  VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE 120

Query: 121 FRNAFSRAYIRVREYDDXXXXXXXXXXXXXXXXXXTMAALIVDCIVPQICFSVTVTCG 178
           FRNAFSRAYIRVREYDD                  TMAALIVDCIVPQICFSVTVTCG
Sbjct: 121 FRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSTMAALIVDCIVPQICFSVTVTCG 178



>Os05g0364600 Similar to ASF/SF2-like pre-mRNA splicing factor SRP31\'\'\'
          Length = 294

 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 104/136 (76%), Gaps = 2/136 (1%)

Query: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQXXXXXXXXXXXXXXXXXXXXXXXXX 60
           FEDPRDA DAI GR GY+FDG+RLRVELAHGGRG                          
Sbjct: 52  FEDPRDAQDAIYGRHGYDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYR-- 109

Query: 61  VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE 120
           VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYRE GAT+GIVDYT YEDMK AIRKLDDSE
Sbjct: 110 VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSE 169

Query: 121 FRNAFSRAYIRVREYD 136
           FRNAFSRAYIRVREYD
Sbjct: 170 FRNAFSRAYIRVREYD 185



>Os07g0673500 Similar to ASF/SF2-like pre-mRNA splicing factor SRP32\'\'
          Length = 296

 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 104/136 (76%), Gaps = 2/136 (1%)

Query: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQXXXXXXXXXXXXXXXXXXXXXXXXX 60
           FEDPRDA+DAI GRDGYNFDG RLRVELAHGGRG                          
Sbjct: 52  FEDPRDAEDAIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYR-- 109

Query: 61  VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE 120
           V+VTGLPSSASWQDLKDHMR AGDVC+S+VYRE G T+GIVDYT Y+DMKYAIRKLDDSE
Sbjct: 110 VLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSE 169

Query: 121 FRNAFSRAYIRVREYD 136
           F+NAFS+AYIRV+EYD
Sbjct: 170 FKNAFSKAYIRVKEYD 185



>Os03g0344100 Similar to ASF/SF2-like pre-mRNA splicing factor SRP32\'\'
          Length = 264

 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 103/137 (75%), Gaps = 1/137 (0%)

Query: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQXXXXX-XXXXXXXXXXXXXXXXXXX 59
           FEDPRDA++A  GRDGYNFDG+RLRVE AHGGRG                          
Sbjct: 52  FEDPRDAEEACAGRDGYNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEY 111

Query: 60  XVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDS 119
            V+VTGLPSSASWQDLKDHMR+AGDVCFS+VYRE G TVGIVDYT Y+DMKYAI+KLDDS
Sbjct: 112 RVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDS 171

Query: 120 EFRNAFSRAYIRVREYD 136
           EFRNAFS+ +IRV+EYD
Sbjct: 172 EFRNAFSKGHIRVKEYD 188



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,901,537
Number of extensions: 144770
Number of successful extensions: 421
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 4
Length of query: 178
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 84
Effective length of database: 12,127,685
Effective search space: 1018725540
Effective search space used: 1018725540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)