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Os05g0364600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ASF/SF2-like pre-mRNA splicing factor SRP31'''.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.59 (0.0237) R2 : 0.61
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.99 (0.0568) R2dC : 0.283 R2C : 0.399
β3 : -0.648 (0.05) R2dE : 0.198 R2E : 0.326
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0473 (0.0544) R2dN8 : 0.00101 R2N8 : 0.0113
σ : 0.43
deviance : 85.05
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C
peak time of C : 11.6
E
wheather : temperature
threshold : 24.62
memory length : 89
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.29 0.416 9.56 0.371 0.996 -0.577 0.659 -0.882 0.175 11.7 24.9 84 -- --
81.08 0.419 9.59 0.108 0.978 -0.637 0.944 -- 0.0849 11.7 24.9 79 -- --
79.93 0.416 9.55 0.463 0.986 -0.577 -- -1.1 0.195 11.7 24.89 77 -- --
84.84 0.429 9.58 0.13 0.979 -0.64 -- -- 0.0724 11.6 24.8 83 -- --
131.74 0.535 9.59 0.422 -- -0.855 -- -1.06 0.0514 -- 24.84 41 -- --
102.63 0.475 9.51 0.265 1.25 -- 1.16 -- 0.414 12.8 -- -- -- --
108.36 0.487 9.51 0.308 1.25 -- -- -- 0.419 12.7 -- -- -- --
135.38 0.542 9.63 0.0446 -- -0.908 -- -- -0.0674 -- 24.89 41 -- --
85.05 0.43 9.59 -- 0.99 -0.648 -- -- 0.0473 11.6 24.62 89 -- --
205.46 0.67 9.53 0.263 -- -- -- -- 0.397 -- -- -- -- --
110.86 0.493 9.51 -- 1.24 -- -- -- 0.385 12.7 -- -- -- --
135.44 0.542 9.64 -- -- -0.915 -- -- -0.0838 -- 24.8 41 -- --
207.29 0.672 9.54 -- -- -- -- -- 0.368 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.65 temperature 30 10 < th dose dependent sin 3 NA
5 73.16 temperature 30 90 < th dose dependent rect. 3 14
8 73.76 temperature 10 10 > th dose dependent sin 4 NA
21 74.34 temperature 30 90 < th dose dependent rect. 1 16
24 74.37 temperature 15 30 > th dose dependent rect. 6 21
33 74.59 temperature 30 90 < th dose dependent rect. 23 18
34 74.60 temperature 25 90 < th dose independent rect. 23 20
36 74.69 temperature 25 90 < th dose independent rect. 23 18
44 75.07 temperature 30 90 < th dose dependent rect. 23 20
64 75.57 temperature 25 90 < th dose independent rect. 1 16
74 75.81 temperature 25 90 < th dose independent rect. 3 14
86 76.13 temperature 25 90 < th dose independent sin 5 NA
102 76.37 temperature 30 90 < th dose dependent rect. 23 22
128 76.83 temperature 25 90 < th dose independent rect. 21 22
138 76.96 temperature 25 90 < th dose independent rect. 23 22
165 77.54 temperature 30 10 < th dose dependent rect. 10 22
176 77.64 temperature 25 10 < th dose independent rect. 3 15
185 77.74 temperature 30 10 < th dose dependent rect. 23 23
198 77.92 temperature 25 10 < th dose independent sin 2 NA
217 78.06 temperature 30 10 < th dose dependent rect. 24 17
219 78.07 temperature 25 90 < th dose independent rect. 9 23
222 78.10 temperature 30 10 < th dose dependent rect. 1 23
240 78.26 temperature 25 90 > th dose independent sin 4 NA
251 78.35 temperature 20 10 > th dose dependent rect. 13 23
254 78.40 temperature 20 10 > th dose dependent rect. 15 23
278 78.61 temperature 30 10 < th dose dependent rect. 3 23
287 78.78 temperature 30 10 < th dose dependent rect. 23 21
290 78.79 temperature 20 10 > th dose dependent rect. 22 14
294 78.81 temperature 25 10 > th dose independent sin 2 NA
299 78.83 temperature 30 10 < th dose dependent rect. 21 23
307 78.91 temperature 30 10 < th dose dependent rect. 19 23
315 78.97 temperature 30 10 < th dose dependent no NA NA
333 79.06 temperature 20 90 > th dose dependent rect. 21 14
348 79.18 temperature 25 90 < th dose independent rect. 1 23
369 79.32 temperature 25 90 < th dose independent no NA NA
381 79.41 temperature 15 10 > th dose dependent no NA NA
385 79.44 temperature 25 90 > th dose independent rect. 20 23
389 79.45 temperature 30 10 < th dose dependent rect. 13 23
397 79.49 temperature 25 90 < th dose independent rect. 17 23
404 79.55 temperature 30 10 < th dose dependent rect. 15 23
430 79.76 temperature 20 10 > th dose dependent rect. 17 23
435 79.78 temperature 25 90 < th dose independent rect. 15 23
437 79.79 temperature 25 90 < th dose independent rect. 7 23
468 79.99 temperature 30 10 < th dose dependent rect. 17 23
515 80.27 temperature 25 10 < th dose independent rect. 3 23
517 80.27 temperature 20 10 > th dose dependent rect. 20 23
519 80.28 temperature 30 30 < th dose dependent rect. 7 23
520 80.30 temperature 25 10 < th dose independent rect. 24 18
532 80.38 temperature 25 90 < th dose independent rect. 13 23
623 80.88 temperature 25 90 > th dose independent rect. 4 23
627 80.90 temperature 25 10 > th dose independent rect. 20 23
647 81.05 temperature 25 10 < th dose independent rect. 22 20
652 81.07 temperature 25 90 > th dose independent rect. 24 23
708 81.28 temperature 20 10 > th dose dependent rect. 2 23
724 81.35 temperature 25 90 > th dose independent rect. 15 23
734 81.40 temperature 25 90 > th dose independent rect. 2 23
740 81.43 temperature 25 90 > th dose independent rect. 13 23
746 81.45 temperature 25 90 > th dose independent no NA NA
779 81.67 temperature 25 90 > th dose independent rect. 6 19
810 81.79 temperature 20 10 > th dose dependent rect. 9 23
846 81.91 temperature 25 10 < th dose independent rect. 20 22
852 81.94 temperature 25 10 < th dose independent rect. 1 23
886 82.05 temperature 25 10 > th dose independent rect. 6 19
924 82.19 temperature 25 90 > th dose independent rect. 4 14
940 82.24 temperature 25 10 < th dose independent rect. 11 23
947 82.26 temperature 20 10 > th dose dependent rect. 23 23
949 82.27 temperature 25 10 > th dose independent rect. 4 21
954 82.28 temperature 25 10 < th dose independent rect. 9 23
969 82.34 temperature 25 90 > th dose independent rect. 17 23
977 82.35 temperature 25 10 < th dose independent no NA NA
978 82.35 temperature 25 90 > th dose independent rect. 6 17
992 82.39 temperature 25 10 > th dose independent rect. 7 5