Os03g0344100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''.
FiT-DB / Search/ Help/ Sample detail
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Os03g0344100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.79 | 0.265 | 12.2 | -0.399 | 0.772 | 0.249 | -0.546 | -1.42 | 0.0753 | 16.8 | 20.6 | 4214 | -- | -- |
| 34.06 | 0.272 | 12.2 | -0.141 | 0.77 | 0.538 | -0.524 | -- | 0.135 | 16.7 | 19.7 | 3914 | -- | -- |
| 32.37 | 0.265 | 12.2 | -0.347 | 0.784 | 0.246 | -- | -1.35 | 0.0853 | 17 | 20.53 | 3120 | -- | -- |
| 34.58 | 0.274 | 12.2 | -0.168 | 0.773 | 0.569 | -- | -- | 0.141 | 16.9 | 19.5 | 3927 | -- | -- |
| 63.31 | 0.371 | 12.2 | -0.346 | -- | 0.277 | -- | -1.2 | 0.0734 | -- | 20.5 | 3299 | -- | -- |
| 38.95 | 0.293 | 12.2 | 0.157 | 0.76 | -- | -0.436 | -- | 0.278 | 16.9 | -- | -- | -- | -- |
| 39.4 | 0.294 | 12.2 | 0.155 | 0.759 | -- | -- | -- | 0.276 | 17 | -- | -- | -- | -- |
| 64.45 | 0.374 | 12.2 | -0.365 | -- | 0.642 | -- | -- | 0.0926 | -- | 17.5 | 22091 | -- | -- |
| 34.97 | 0.275 | 12.2 | -- | 0.763 | 0.492 | -- | -- | 0.177 | 16.9 | 18.92 | 3667 | -- | -- |
| 69.64 | 0.39 | 12.2 | 0.127 | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
| 40.04 | 0.296 | 12.2 | -- | 0.756 | -- | -- | -- | 0.259 | 17 | -- | -- | -- | -- |
| 65.51 | 0.377 | 12.2 | -- | -- | 0.476 | -- | -- | 0.186 | -- | 19.1 | 3341 | -- | -- |
| 70.07 | 0.391 | 12.2 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.42 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 2 | 30.44 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 3 | 30.48 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 6 | 30.49 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 20 | 30.55 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 25 | 30.59 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 26 | 30.60 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 31 | 30.62 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 33 | 30.63 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 61 | 30.76 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 66 | 30.78 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 69 | 30.79 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 71 | 30.80 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 77 | 30.82 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 83 | 30.83 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 86 | 30.84 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 89 | 30.85 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 92 | 30.86 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 94 | 30.87 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 101 | 30.88 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 106 | 30.89 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 113 | 30.91 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 120 | 30.92 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 160 | 31.05 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 222 | 31.18 | temperature | 20.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 245 | 31.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 260 | 31.24 | temperature | 20.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 331 | 31.40 | temperature | 20.0 | 720 | > th | dose independent | rect. | 22 | 12 |
| 358 | 31.45 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 363 | 31.46 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 375 | 31.49 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 386 | 31.49 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 400 | 31.52 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 413 | 31.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 513 | 31.65 | temperature | 20.0 | 720 | > th | dose independent | sin | 7 | NA |
| 515 | 31.65 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 529 | 31.65 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 541 | 31.65 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 577 | 31.69 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 647 | 31.76 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 663 | 31.78 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 690 | 31.79 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 698 | 31.81 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 706 | 31.81 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 721 | 31.82 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 722 | 31.82 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 783 | 31.88 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 863 | 31.93 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 879 | 31.94 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 881 | 31.94 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 890 | 31.95 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 963 | 31.99 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |