Os07g0673500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''.
FiT-DB / Search/ Help/ Sample detail
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Os07g0673500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.93 | 0.22 | 11.7 | -1.1 | 0.387 | 0.336 | -0.197 | -0.809 | -0.0139 | 1.44 | 21.3 | 3961 | -- | -- |
| 22.9 | 0.223 | 11.6 | -0.939 | 0.376 | 0.46 | -0.265 | -- | 0.0245 | 1.3 | 21.2 | 4010 | -- | -- |
| 22.06 | 0.219 | 11.7 | -1.1 | 0.386 | 0.335 | -- | -0.834 | -0.0146 | 1.5 | 21.3 | 3885 | -- | -- |
| 23.12 | 0.224 | 11.7 | -0.91 | 0.384 | 0.439 | -- | -- | 0.0319 | 1.47 | 21.1 | 4009 | -- | -- |
| 31.02 | 0.259 | 11.7 | -1.05 | -- | 0.373 | -- | -0.755 | -0.0105 | -- | 21.9 | 2486 | -- | -- |
| 27.33 | 0.245 | 11.6 | -0.651 | 0.406 | -- | -0.248 | -- | 0.172 | 1.43 | -- | -- | -- | -- |
| 27.58 | 0.246 | 11.6 | -0.643 | 0.407 | -- | -- | -- | 0.173 | 1.49 | -- | -- | -- | -- |
| 32.04 | 0.264 | 11.7 | -0.926 | -- | 0.496 | -- | -- | 0.0167 | -- | 21.1 | 3870 | -- | -- |
| 33.04 | 0.268 | 11.6 | -- | 0.411 | -0.342 | -- | -- | 0.357 | 1.51 | 21.6 | 47520 | -- | -- |
| 37.73 | 0.287 | 11.6 | -0.627 | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
| 38.48 | 0.29 | 11.6 | -- | 0.396 | -- | -- | -- | 0.245 | 1.43 | -- | -- | -- | -- |
| 43.39 | 0.307 | 11.6 | -- | -- | -0.318 | -- | -- | 0.363 | -- | 22.08 | 47520 | -- | -- |
| 48.1 | 0.324 | 11.6 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.14 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 2 | 21.31 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 3 | 21.31 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 4 | 21.33 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 20 | 21.33 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 36 | 21.34 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 37 | 21.34 | radiation | 10 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 38 | 21.36 | radiation | 20 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 39 | 21.36 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 43 | 21.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 47 | 21.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 48 | 21.38 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 49 | 21.39 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 56 | 21.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 60 | 21.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 63 | 21.44 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 73 | 21.46 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 75 | 21.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 76 | 21.47 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 85 | 21.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 91 | 21.48 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 93 | 21.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 116 | 21.50 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 122 | 21.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 148 | 21.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 182 | 21.53 | radiation | 20 | 43200 | < th | dose independent | sin | 23 | NA |
| 281 | 21.55 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 321 | 21.56 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 330 | 21.57 | radiation | 20 | 43200 | < th | dose independent | no | NA | NA |
| 336 | 21.57 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 494 | 21.58 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 533 | 21.58 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 542 | 21.59 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 543 | 21.59 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 563 | 21.59 | radiation | 30 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 564 | 21.60 | radiation | 20 | 43200 | > th | dose independent | sin | 11 | NA |
| 598 | 21.60 | radiation | 30 | 43200 | < th | dose dependent | sin | 4 | NA |
| 632 | 21.60 | radiation | 10 | 43200 | > th | dose dependent | rect. | 11 | 22 |
| 663 | 21.61 | radiation | 30 | 43200 | < th | dose dependent | sin | 2 | NA |
| 666 | 21.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 676 | 21.61 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 8 |
| 758 | 21.62 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 777 | 21.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 847 | 21.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 886 | 21.63 | radiation | 10 | 43200 | > th | dose dependent | sin | 0 | NA |
| 988 | 21.63 | radiation | 30 | 43200 | < th | dose dependent | rect. | 12 | 22 |