BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0673500 Os07g0673500|AK106176
(296 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0673500 Similar to ASF/SF2-like pre-mRNA splicing fact... 328 2e-90
Os03g0344100 Similar to ASF/SF2-like pre-mRNA splicing fact... 296 2e-80
Os05g0364600 Similar to ASF/SF2-like pre-mRNA splicing fact... 290 6e-79
Os01g0316600 Similar to ASF/SF2-like pre-mRNA splicing fact... 186 1e-47
Os04g0118900 Similar to Arginine/serine-rich splicing facto... 67 2e-11
>Os07g0673500 Similar to ASF/SF2-like pre-mRNA splicing factor SRP32\'\'
Length = 296
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/185 (87%), Positives = 162/185 (87%)
Query: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAED 60
MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAED
Sbjct: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAED 60
Query: 61 AIRGRDGYNFDGNRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXHTEYRVLVTGLPSSAS 120
AIRGRDGYNFDGNRLRVELAH HTEYRVLVTGLPSSAS
Sbjct: 61 AIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSAS 120
Query: 121 WQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIR 180
WQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIR
Sbjct: 121 WQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIR 180
Query: 181 VKEYD 185
VKEYD
Sbjct: 181 VKEYD 185
>Os03g0344100 Similar to ASF/SF2-like pre-mRNA splicing factor SRP32\'\'
Length = 264
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/188 (78%), Positives = 157/188 (83%), Gaps = 3/188 (1%)
Query: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAED 60
MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPG+AFVEFEDPRDAE+
Sbjct: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEE 60
Query: 61 AIRGRDGYNFDGNRLRVELAHXXXXXXXXXX---XXXXXXXXXXXXXHTEYRVLVTGLPS 117
A GRDGYNFDG+RLRVE AH H+EYRVLVTGLPS
Sbjct: 61 ACAGRDGYNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPS 120
Query: 118 SASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKA 177
SASWQDLKDHMR AGDVC+SEVYREGGGT+GIVDYTNYDDMKYAI+KLDDSEF+NAFSK
Sbjct: 121 SASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEFRNAFSKG 180
Query: 178 YIRVKEYD 185
+IRVKEYD
Sbjct: 181 HIRVKEYD 188
>Os05g0364600 Similar to ASF/SF2-like pre-mRNA splicing factor SRP31\'\'\'
Length = 294
Score = 290 bits (743), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 143/185 (77%), Positives = 155/185 (83%)
Query: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAED 60
MSRR SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPG+AFVEFEDPRDA+D
Sbjct: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQD 60
Query: 61 AIRGRDGYNFDGNRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXHTEYRVLVTGLPSSAS 120
AI GR GY+FDG+RLRVELAH T+YRV+VTGLPSSAS
Sbjct: 61 AIYGRHGYDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGLPSSAS 120
Query: 121 WQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIR 180
WQDLKDHMR AGDVC+S+VYREGG TIGIVDYTNY+DMK AIRKLDDSEF+NAFS+AYIR
Sbjct: 121 WQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIR 180
Query: 181 VKEYD 185
V+EYD
Sbjct: 181 VREYD 185
>Os01g0316600 Similar to ASF/SF2-like pre-mRNA splicing factor SRP30\'
Length = 178
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 104/136 (76%), Gaps = 2/136 (1%)
Query: 52 FEDPRDAEDAIRGRDGYNFDGNRLRVELAHXXXXXXXXXXX--XXXXXXXXXXXXHTEYR 109
FEDPRDA+DAI GRDGYNFDG RLRVELAH +EYR
Sbjct: 1 FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYR 60
Query: 110 VLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSE 169
V+VTGLPSSASWQDLKDHMR AGDVC+S+VYRE G T+GIVDYT Y+DMKYAIRKLDDSE
Sbjct: 61 VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE 120
Query: 170 FKNAFSKAYIRVKEYD 185
F+NAFS+AYIRV+EYD
Sbjct: 121 FRNAFSRAYIRVREYD 136
>Os04g0118900 Similar to Arginine/serine-rich splicing factor 1 variant 2
Length = 245
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRD 66
R ++VGNL D R E++ LFY+YGRI ID+K GFAFV FED RD ++AIR D
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMK-----SGFAFVYFEDERDGDEAIRALD 56
Query: 67 GYNFDGNRLRVEL 79
GY F R R+ +
Sbjct: 57 GYPFGPGRRRLSV 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.139 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,187,893
Number of extensions: 281491
Number of successful extensions: 907
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 8
Length of query: 296
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 196
Effective length of database: 11,814,401
Effective search space: 2315622596
Effective search space used: 2315622596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)