Os04g0118900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Arginine/serine-rich splicing factor 1 variant 2.
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Os04g0118900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Arginine/serine-rich splicing factor 1 variant 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.26 | 0.287 | 11.2 | 0.397 | 1.02 | -1.2 | 0.0329 | 0.394 | 0.0109 | 18.7 | 29.9 | 89 | -- | -- |
| 37.45 | 0.285 | 11.2 | 0.461 | 1.01 | -1.2 | -0.00519 | -- | 0.0261 | 18.7 | 29.75 | 89 | -- | -- |
| 37.27 | 0.284 | 11.2 | 0.397 | 1.02 | -1.2 | -- | 0.389 | 0.0112 | 18.7 | 29.9 | 89 | -- | -- |
| 37.45 | 0.285 | 11.2 | 0.461 | 1.01 | -1.2 | -- | -- | 0.0259 | 18.7 | 29.75 | 89 | -- | -- |
| 75.82 | 0.406 | 11.2 | 0.161 | -- | -2.1 | -- | 0.855 | -0.0826 | -- | 46.83 | 282 | -- | -- |
| 56.49 | 0.352 | 11.2 | 0.758 | 1.27 | -- | 0.149 | -- | 0.263 | 17.7 | -- | -- | -- | -- |
| 56.55 | 0.352 | 11.2 | 0.757 | 1.27 | -- | -- | -- | 0.263 | 17.7 | -- | -- | -- | -- |
| 76.32 | 0.407 | 11.2 | 0.294 | -- | -2.07 | -- | -- | -0.0465 | -- | 57.06 | 275 | -- | -- |
| 42.57 | 0.304 | 11.3 | -- | 0.935 | -1.4 | -- | -- | -0.0557 | 18.8 | 29.63 | 104 | -- | -- |
| 140.49 | 0.554 | 11.2 | 0.717 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 71.65 | 0.396 | 11.2 | -- | 1.26 | -- | -- | -- | 0.179 | 17.7 | -- | -- | -- | -- |
| 78.44 | 0.413 | 11.2 | -- | -- | -2.17 | -- | -- | -0.0902 | -- | 52.18 | 275 | -- | -- |
| 154.04 | 0.579 | 11.2 | -- | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 2 | 31.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 14 | 32.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 15 | 32.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 17 | 32.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 21 | 32.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 23 | 32.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 25 | 33.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 77 | 34.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 99 | 34.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 117 | 35.05 | temperature | 15 | 90 | > th | dose dependent | sin | 4 | NA |
| 123 | 35.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 129 | 35.27 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 185 | 35.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 227 | 36.34 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 239 | 36.45 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 305 | 37.01 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 333 | 37.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 341 | 37.27 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 346 | 37.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 357 | 37.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 367 | 37.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 374 | 37.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 389 | 37.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 396 | 37.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 410 | 37.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 447 | 37.84 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 492 | 37.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 568 | 38.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 586 | 38.31 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 599 | 38.34 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 609 | 38.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 632 | 38.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 644 | 38.46 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 668 | 38.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 704 | 38.65 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 727 | 38.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 739 | 38.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 752 | 38.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 754 | 38.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 791 | 38.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 796 | 38.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 806 | 38.83 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 20 |
| 817 | 38.85 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 867 | 38.92 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 910 | 38.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 14 |