BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0118900 Os04g0118900|AK102071
         (245 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0118900  Similar to Arginine/serine-rich splicing facto...   354   3e-98
Os02g0122800  Nucleotide-binding, alpha-beta plait domain co...   231   3e-61
Os07g0673500  Similar to ASF/SF2-like pre-mRNA splicing fact...    67   1e-11

>Os04g0118900 Similar to Arginine/serine-rich splicing factor 1 variant 2
          Length = 245

 Score =  354 bits (909), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/245 (76%), Positives = 187/245 (76%)

Query: 1   MRPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGYPF 60
           MRPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGYPF
Sbjct: 1   MRPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGYPF 60

Query: 61  GPGRRRLSVEWXXXXXXXXXXXYSKPPVNTKPTKTLFVINFDPINTRVTDIERHFEPFGK 120
           GPGRRRLSVEW           YSKPPVNTKPTKTLFVINFDPINTRVTDIERHFEPFGK
Sbjct: 61  GPGRRRLSVEWSRGDRGSRRDGYSKPPVNTKPTKTLFVINFDPINTRVTDIERHFEPFGK 120

Query: 121 LSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFRDDTEXXXXXXXXXXX 180
           LSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFRDDTE           
Sbjct: 121 LSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFRDDTERGDRYDGARGG 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXDYGRQRSPVYGSYDRSPVNDXXXXXXXXXXXXXPLAN 240
                                  DYGRQRSPVYGSYDRSPVND             PLAN
Sbjct: 181 YGRRDDSPYRRSVSPVYRSRPSPDYGRQRSPVYGSYDRSPVNDRYRSRSPVRRSRSPLAN 240

Query: 241 RRAYD 245
           RRAYD
Sbjct: 241 RRAYD 245



>Os02g0122800 Nucleotide-binding, alpha-beta plait domain containing protein
          Length = 279

 Score =  231 bits (590), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 131/170 (77%), Gaps = 1/170 (0%)

Query: 1   MRPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGYPF 60
           MRPVF GNLDYD R SE++RLF +YGR++R+DMKSGFAFVY EDERD DEAI  LD   F
Sbjct: 1   MRPVFCGNLDYDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEF 60

Query: 61  GPGRRRLSVEWXXXXXXXXXXXYSK-PPVNTKPTKTLFVINFDPINTRVTDIERHFEPFG 119
           G   RRL VEW            SK  P NT+PTKTLFVINFDPINTR  D+ERHF+ +G
Sbjct: 61  GRKGRRLRVEWTKEDRSGGRRGNSKRSPNNTRPTKTLFVINFDPINTRTRDLERHFDQYG 120

Query: 120 KLSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFRDDTE 169
           K+SNVRIRRNFAFVQ+E QE+ATKALE T+ + L+DRVISVEYA RDD E
Sbjct: 121 KISNVRIRRNFAFVQYELQEDATKALEGTNGSTLMDRVISVEYALRDDDE 170



>Os07g0673500 Similar to ASF/SF2-like pre-mRNA splicing factor SRP32\'\'
          Length = 296

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 5/73 (6%)

Query: 2  RPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMK-----SGFAFVYFEDERDGDEAIRALD 56
          R ++VGNL  D R  E++ LFY+YGRI  ID+K      GFAFV FED RD ++AIR  D
Sbjct: 7  RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRD 66

Query: 57 GYPFGPGRRRLSV 69
          GY F   R R+ +
Sbjct: 67 GYNFDGNRLRVEL 79



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,321,596
Number of extensions: 212044
Number of successful extensions: 634
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 4
Length of query: 245
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 147
Effective length of database: 11,918,829
Effective search space: 1752067863
Effective search space used: 1752067863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)