Os02g0122800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os02g0122800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.83 | 0.438 | 11.3 | 1.42 | 2.39 | -1.36 | -0.662 | 0.39 | 0.919 | 16.2 | 10.07 | 16 | -- | -- |
| 86.93 | 0.438 | 11.4 | 1.36 | 2.39 | -1.34 | -0.582 | -- | 0.901 | 16.2 | 13.34 | 16 | -- | -- |
| 87.83 | 0.436 | 11.4 | 1.35 | 2.39 | -1.35 | -- | 0.0202 | 0.89 | 16.2 | 12.96 | 19 | -- | -- |
| 87.79 | 0.436 | 11.4 | 1.36 | 2.4 | -1.38 | -- | -- | 0.905 | 16.2 | 13.2 | 19 | -- | -- |
| 305.08 | 0.813 | 11.4 | 0.875 | -- | 1.29 | -- | 0.853 | 0.515 | -- | -1.776 | 250 | -- | -- |
| 104.38 | 0.479 | 11.4 | 1.1 | 2.06 | -- | -0.717 | -- | 0.713 | 16.5 | -- | -- | -- | -- |
| 105.73 | 0.482 | 11.4 | 1.09 | 2.06 | -- | -- | -- | 0.709 | 16.5 | -- | -- | -- | -- |
| 277.08 | 0.775 | 11.4 | 0.795 | -- | 1.36 | -- | -- | 0.483 | -- | 24.5 | 268 | -- | -- |
| 131.65 | 0.537 | 11.4 | -- | 2.2 | -0.713 | -- | -- | 0.673 | 16.4 | 13.21 | 16 | -- | -- |
| 331.23 | 0.85 | 11.4 | 1.01 | -- | -- | -- | -- | 0.655 | -- | -- | -- | -- | -- |
| 137.04 | 0.548 | 11.4 | -- | 2.04 | -- | -- | -- | 0.588 | 16.6 | -- | -- | -- | -- |
| 292.99 | 0.797 | 11.4 | -- | -- | 1.5 | -- | -- | 0.438 | -- | 24.5 | 271 | -- | -- |
| 358.16 | 0.883 | 11.4 | -- | -- | -- | -- | -- | 0.543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.41 | humidity | 50 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 3 | 81.68 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 4 | 81.98 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 12 |
| 6 | 82.10 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 7 | 82.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 9 | 82.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 15 | 82.48 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 18 | 82.57 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 19 |
| 19 | 82.62 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 29 | 82.90 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 41 | 83.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 51 | 83.36 | radiation | 30 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 69 | 83.59 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 81 | 83.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 15 |
| 94 | 84.10 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 100 | 84.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 101 | 84.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 106 | 84.25 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 13 |
| 175 | 84.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 15 |
| 178 | 84.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 194 | 84.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 210 | 85.04 | humidity | 80 | 270 | > th | dose independent | rect. | 5 | 10 |
| 226 | 85.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 233 | 85.26 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 245 | 85.32 | humidity | 50 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 261 | 85.39 | humidity | 70 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 281 | 85.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 340 | 85.78 | radiation | 20 | 30 | < th | dose independent | rect. | 7 | 19 |
| 391 | 85.99 | humidity | 50 | 270 | > th | dose dependent | sin | 1 | NA |
| 409 | 86.06 | humidity | 50 | 10 | > th | dose dependent | sin | 22 | NA |
| 417 | 86.10 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 419 | 86.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 438 | 86.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 439 | 86.19 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 20 |
| 440 | 86.19 | humidity | 70 | 10 | > th | dose dependent | sin | 21 | NA |
| 444 | 86.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 456 | 86.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 489 | 86.33 | humidity | 80 | 10 | > th | dose independent | rect. | 7 | 9 |
| 500 | 86.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 526 | 86.44 | humidity | 50 | 14400 | < th | dose independent | sin | 11 | NA |
| 538 | 86.46 | humidity | 50 | 14400 | > th | dose independent | sin | 11 | NA |
| 546 | 86.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 12 |
| 569 | 86.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 577 | 86.60 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 20 |
| 647 | 86.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 685 | 86.86 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 20 |
| 687 | 86.86 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 696 | 86.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 718 | 86.93 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 731 | 86.95 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 837 | 87.14 | radiation | 40 | 270 | < th | dose independent | rect. | 5 | 12 |
| 844 | 87.15 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 889 | 87.22 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 934 | 87.29 | temperature | 15 | 270 | > th | dose independent | rect. | 1 | 13 |
| 961 | 87.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 968 | 87.36 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 977 | 87.38 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 997 | 87.41 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 22 |