BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0316600 Os01g0316600|AK103534
         (178 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02840.1  | chr1:626918-629583 FORWARD LENGTH=304              172   1e-43
AT1G09140.1  | chr1:2942887-2945818 REVERSE LENGTH=269            166   7e-42
AT3G49430.1  | chr3:18332668-18334829 FORWARD LENGTH=301          159   9e-40
AT4G02430.2  | chr4:1069186-1071313 FORWARD LENGTH=279            156   5e-39

>AT1G02840.1 | chr1:626918-629583 FORWARD LENGTH=304
          Length = 303

 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 99/145 (68%), Gaps = 9/145 (6%)

Query: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQX---------XXXXXXXXXXXXXXX 51
           F+D RDA+DAI GRDGY+FDG+RLRVELAHGGR                           
Sbjct: 52  FDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSR 111

Query: 52  XXXXXXXXXVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKY 111
                    V+VTGLPSSASWQDLKDHMR+ GDVCFS VYR+A  T G+VDYT YEDMKY
Sbjct: 112 GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKY 171

Query: 112 AIRKLDDSEFRNAFSRAYIRVREYD 136
           A++KLDD+EFRNAFS  Y+RVREYD
Sbjct: 172 ALKKLDDTEFRNAFSNGYVRVREYD 196



>AT1G09140.1 | chr1:2942887-2945818 REVERSE LENGTH=269
          Length = 268

 Score =  166 bits (419), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 1/136 (0%)

Query: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQXXXXXXXXXXXXXXXXXXXXXXXXX 60
           FEDPRDADDAI GRDGY+FDG RLRVE+AHGGR +                         
Sbjct: 52  FEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGR-RFSPSVDRYSSSYSASRAPSRRSDYR 110

Query: 61  VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE 120
           V+VTGLP SASWQDLKDHMR+AGDVCFS+V+ +     G+VDY+ Y+DMKYAIRKLD +E
Sbjct: 111 VLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATE 170

Query: 121 FRNAFSRAYIRVREYD 136
           FRNAFS AYIRVREY+
Sbjct: 171 FRNAFSSAYIRVREYE 186



>AT3G49430.1 | chr3:18332668-18334829 FORWARD LENGTH=301
          Length = 300

 Score =  159 bits (401), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 82/148 (55%), Positives = 98/148 (66%), Gaps = 12/148 (8%)

Query: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQXXXXXXXXXXXXXXXXXX------- 53
           FE  RDA+DAI GRDGYN DG RLRVELAHGGRGQ                         
Sbjct: 52  FEHSRDAEDAIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGS 111

Query: 54  -----XXXXXXXVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYED 108
                       V+V GLPSSASWQDLKDHMR+AGDVCF++V R++  T G+VDYT Y+D
Sbjct: 112 ARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDD 171

Query: 109 MKYAIRKLDDSEFRNAFSRAYIRVREYD 136
           MKYAIRKLDD+EFRN ++R +IRV++Y+
Sbjct: 172 MKYAIRKLDDTEFRNPWARGFIRVKKYE 199



>AT4G02430.2 | chr4:1069186-1071313 FORWARD LENGTH=279
          Length = 278

 Score =  156 bits (395), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 95/146 (65%), Gaps = 13/146 (8%)

Query: 1   FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQXX----------XXXXXXXXXXXXX 50
           FED RDADDAI GRDGY+FDG+ LRVELAHGGR                           
Sbjct: 52  FEDARDADDAIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRE 111

Query: 51  XXXXXXXXXXVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMK 110
                     V+V+GLPSSASWQDLKDHMR+ G+VCFS V+R+   T GIVDYT+YEDMK
Sbjct: 112 RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMK 171

Query: 111 YAIRKLDDSEFRNAFSRAYIRVREYD 136
           YA   LDD+EFRNAFS  Y+RVREYD
Sbjct: 172 YA---LDDTEFRNAFSHEYVRVREYD 194



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,085,333
Number of extensions: 88546
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 6
Length of query: 178
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 86
Effective length of database: 8,584,297
Effective search space: 738249542
Effective search space used: 738249542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)