Os03g0285900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Splicing factor RSZ33.
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Os03g0285900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Splicing factor RSZ33.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.06 | 0.17 | 12.4 | -0.376 | 0.339 | -0.526 | 0.423 | -0.281 | -0.0221 | 1.28 | 21.04 | 5493 | -- | -- |
| 13.19 | 0.169 | 12.4 | -0.407 | 0.344 | -0.483 | 0.489 | -- | -0.0216 | 1.27 | 21 | 5361 | -- | -- |
| 13.78 | 0.173 | 12.4 | -0.388 | 0.34 | -0.518 | -- | -0.293 | -0.0229 | 1.39 | 21.03 | 5611 | -- | -- |
| 13.83 | 0.173 | 12.4 | -0.382 | 0.333 | -0.439 | -- | -- | -0.0245 | 1.46 | 21.3 | 3838 | -- | -- |
| 20.5 | 0.211 | 12.4 | -0.368 | -- | -0.492 | -- | -0.112 | -0.0284 | -- | 21.3 | 3832 | -- | -- |
| 17.84 | 0.198 | 12.3 | -0.113 | 0.357 | -- | 0.425 | -- | 0.121 | 1.27 | -- | -- | -- | -- |
| 18.57 | 0.202 | 12.3 | -0.129 | 0.358 | -- | -- | -- | 0.119 | 1.42 | -- | -- | -- | -- |
| 19.84 | 0.207 | 12.4 | -0.272 | -- | -0.475 | -- | -- | 0.0317 | -- | 24.6 | 3928 | -- | -- |
| 15.84 | 0.185 | 12.4 | -- | 0.324 | -0.276 | -- | -- | 0.0381 | 1.42 | 22.65 | 2527 | -- | -- |
| 26.44 | 0.24 | 12.3 | -0.114 | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
| 19.01 | 0.204 | 12.3 | -- | 0.355 | -- | -- | -- | 0.133 | 1.41 | -- | -- | -- | -- |
| 20.98 | 0.213 | 12.4 | -- | -- | -0.427 | -- | -- | 0.0293 | -- | 24.8 | 2492 | -- | -- |
| 26.78 | 0.242 | 12.3 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.82 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 2 | 12.83 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 3 | 12.83 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 17 | 12.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 31 | 12.89 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 34 | 12.90 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 73 | 12.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 14 |
| 103 | 12.95 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 244 | 13.01 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 266 | 13.02 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 404 | 13.07 | temperature | 15 | 4320 | > th | dose dependent | sin | 12 | NA |
| 555 | 13.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 658 | 13.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 786 | 13.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 797 | 13.21 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 913 | 13.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 917 | 13.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 945 | 13.24 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |