BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0285900 Os03g0285900|AK073348
         (330 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0285900  Similar to Splicing factor RSZ33                    305   3e-83
Os05g0120100  Similar to Splicing factor RSZ33                    287   6e-78
Os01g0155600  Similar to Splicing factor RSZ33                    248   6e-66
Os05g0162600  Similar to Splicing factor RSZ33                    180   1e-45
Os05g0364600  Similar to ASF/SF2-like pre-mRNA splicing fact...    67   2e-11

>Os03g0285900 Similar to Splicing factor RSZ33
          Length = 330

 Score =  305 bits (781), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MPRYDDHYGSTRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEA 60
           MPRYDDHYGSTRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEA
Sbjct: 1   MPRYDDHYGSTRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEA 60

Query: 61  RYNLDGRDVDGSRILVEFAKGVPRGAAGGSREYMGRGPPPGTGRCFNCGIDGHWARDCKA 120
           RYNLDGRDVDGSRILVEFAKGVPRGAAGGSREYMGRGPPPGTGRCFNCGIDGHWARDCKA
Sbjct: 61  RYNLDGRDVDGSRILVEFAKGVPRGAAGGSREYMGRGPPPGTGRCFNCGIDGHWARDCKA 120

Query: 121 GDWKNKCYRCGERGHIERNCQNSPRN 146
           GDWKNKCYRCGERGHIERNCQNSPRN
Sbjct: 121 GDWKNKCYRCGERGHIERNCQNSPRN 146




 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 56/85 (65%)

Query: 217 PAANGKEXXXXXXXXXXXXXXQDRVSPPPKDNDERNGDSPWGRENSRSPSDGYRSPVAAX 276
           PAANGKE              QDRVSPPPKDNDERNGDSPWGRENSRSPSDGYRSPVAA 
Sbjct: 217 PAANGKERNPSPNGRRSPRSPQDRVSPPPKDNDERNGDSPWGRENSRSPSDGYRSPVAAN 276

Query: 277 XXXXXXXXXXXXXXMDNNSRSPRDN 301
                         MDNNSRSPRDN
Sbjct: 277 GRSPSPRNNGSPSPMDNNSRSPRDN 301



>Os05g0120100 Similar to Splicing factor RSZ33
          Length = 323

 Score =  287 bits (735), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 140/146 (95%), Positives = 141/146 (96%), Gaps = 1/146 (0%)

Query: 1   MPRYDDHYGSTRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEA 60
           MPRYDD YGSTRLYVGRLSSRTRSRDLEY F RYGRIREVELKRDYAFIEFSDPRDA+EA
Sbjct: 1   MPRYDDRYGSTRLYVGRLSSRTRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEA 60

Query: 61  RYNLDGRDVDGSRILVEFAKGVPRGAAGGSREYMGRGPPPGTGRCFNCGIDGHWARDCKA 120
           RYNLDGRDVDGSRILVEFAKGVPRG  GGSREYMGRGPPPGTGRCFNCGIDGHWARDCKA
Sbjct: 61  RYNLDGRDVDGSRILVEFAKGVPRG-PGGSREYMGRGPPPGTGRCFNCGIDGHWARDCKA 119

Query: 121 GDWKNKCYRCGERGHIERNCQNSPRN 146
           GDWKNKCYRCGERGHIERNCQNSPRN
Sbjct: 120 GDWKNKCYRCGERGHIERNCQNSPRN 145




 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 217 PAANGKEXXXXXXXXXXXXXXQDRVSPPPKDNDERNG----DSPWGRENSRSPSDGYRSP 272
           PAAN K+              QD+VSPPPKDN ERNG    DSP GRENSRSPSDGYRSP
Sbjct: 214 PAANEKKRSPTPDGSRSPRSPQDQVSPPPKDNAERNGSDHGDSPRGRENSRSPSDGYRSP 273

Query: 273 VAAXXXXXXXXXXXXXXXMDNNSRSPRD 300
            AA               MDN SRSPRD
Sbjct: 274 AAANGRSPSPRNNGSPSPMDNGSRSPRD 301



>Os01g0155600 Similar to Splicing factor RSZ33
          Length = 324

 Score =  248 bits (632), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 131/138 (94%), Gaps = 1/138 (0%)

Query: 9   GSTRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEARYNLDGRD 68
           G+TRLYVGRLSSRTR+RDLE LFGRYGR+R V++K ++AF+EFSD RDADEARYNLDGRD
Sbjct: 16  GNTRLYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRD 75

Query: 69  VDGSRILVEFAKGVPRGAAGGSREYMGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCY 128
            DGSR++VEFAKGVPRG  GGSREYMGRGPPPG+GRCFNCGIDGHWARDCKAGDWKN+CY
Sbjct: 76  FDGSRMIVEFAKGVPRG-PGGSREYMGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNRCY 134

Query: 129 RCGERGHIERNCQNSPRN 146
           RCG+RGHIER+C+NSP+N
Sbjct: 135 RCGDRGHIERDCRNSPKN 152



>Os05g0162600 Similar to Splicing factor RSZ33
          Length = 338

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 111/144 (77%), Gaps = 2/144 (1%)

Query: 3   RYDDHYGSTRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEARY 62
           RY+    ++RLYVG +S RTR+ DLE LF RYGR+R V+LK +Y F+EFSDPRDA++AR 
Sbjct: 10  RYEPRGRNSRLYVGHISLRTRAEDLENLFSRYGRVRFVDLKNEYGFVEFSDPRDANDARL 69

Query: 63  NLDGRDVDGSRILVEFAKGVPRGAAGGSREYMGRGPPPGTGRCFNCGIDGHWARDCKAGD 122
           +LDGR  DGS I+V+FA+GV RG  GGSR Y  R P  G+  CFNCG++GHW R+C AGD
Sbjct: 70  DLDGRKYDGSDIIVQFARGVERG-LGGSRGYKAR-PAHGSDHCFNCGMEGHWHRNCTAGD 127

Query: 123 WKNKCYRCGERGHIERNCQNSPRN 146
           W N+CY CGERGHI R C+NSP++
Sbjct: 128 WTNRCYGCGERGHILRECKNSPKD 151



>Os05g0364600 Similar to ASF/SF2-like pre-mRNA splicing factor SRP31\'\'\'
          Length = 294

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 5/77 (6%)

Query: 10 STRLYVGRLSSRTRSRDLEYLFGRYGRIREVELKRD-----YAFIEFSDPRDADEARYNL 64
          S  +YVG L    R R++E LF +YGRI +++LK       YAF+EF DPRDA +A Y  
Sbjct: 6  SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGR 65

Query: 65 DGRDVDGSRILVEFAKG 81
           G D DG R+ VE A G
Sbjct: 66 HGYDFDGHRLRVELAHG 82



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,537,032
Number of extensions: 429944
Number of successful extensions: 2790
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2794
Number of HSP's successfully gapped: 13
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)