BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0361900 Os05g0361900|AK060107
(288 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0361900 Mitochondrial substrate carrier family protein 491 e-139
Os07g0295000 Mitochondrial substrate carrier family protein 407 e-114
Os02g0665200 Mitochondrial substrate carrier family protein 118 4e-27
Os11g0103700 Mitochondrial substrate carrier family protein 108 5e-24
Os12g0103000 Mitochondrial substrate carrier family protein 108 6e-24
Os03g0213800 Mitochondrial substrate carrier family protein 105 4e-23
Os01g0964900 Similar to Mitochondrial carrier protein-like 97 9e-21
AK107228 93 2e-19
Os03g0296800 Mitochondrial substrate carrier family protein 89 2e-18
Os01g0143100 Mitochondrial substrate carrier family protein 69 5e-12
Os09g0497000 Mitochondrial substrate carrier family protein 67 2e-11
Os11g0707800 Uncoupling protein 66 3e-11
>Os05g0361900 Mitochondrial substrate carrier family protein
Length = 288
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/288 (85%), Positives = 247/288 (85%)
Query: 1 MAVGGEEEKPFNFLQILCXXXXXXXXXXXXXXXXLYPIDTIKTRLQAARGGSQIQWKGLY 60
MAVGGEEEKPFNFLQILC LYPIDTIKTRLQAARGGSQIQWKGLY
Sbjct: 1 MAVGGEEEKPFNFLQILCEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGSQIQWKGLY 60
Query: 61 SGLAGNIAGVLPASAVFVGIYEPTKRKLLETFPENLSAVAHFTXXXXXXXXXSLIRVPTE 120
SGLAGNIAGVLPASAVFVGIYEPTKRKLLETFPENLSAVAHFT SLIRVPTE
Sbjct: 61 SGLAGNIAGVLPASAVFVGIYEPTKRKLLETFPENLSAVAHFTAGAIGGIAASLIRVPTE 120
Query: 121 VVKQRMQTGQFRSAPDAVRLIVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYK 180
VVKQRMQTGQFRSAPDAVRLIVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYK
Sbjct: 121 VVKQRMQTGQFRSAPDAVRLIVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYK 180
Query: 181 VVAKRELNDPENXXXXXXXXXXXXXXXXPLDVMKTRLMVQGSANQYSGIVSCAQTILREE 240
VVAKRELNDPEN PLDVMKTRLMVQGSANQYSGIVSCAQTILREE
Sbjct: 181 VVAKRELNDPENALIGAFAGAITGAITTPLDVMKTRLMVQGSANQYSGIVSCAQTILREE 240
Query: 241 GPGAFLKGIEPRVLWIGIGGSIFFGVLEKTKSMLAERRSREPPAGKDE 288
GPGAFLKGIEPRVLWIGIGGSIFFGVLEKTKSMLAERRSREPPAGKDE
Sbjct: 241 GPGAFLKGIEPRVLWIGIGGSIFFGVLEKTKSMLAERRSREPPAGKDE 288
>Os07g0295000 Mitochondrial substrate carrier family protein
Length = 284
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/277 (72%), Positives = 219/277 (79%)
Query: 5 GEEEKPFNFLQILCXXXXXXXXXXXXXXXXLYPIDTIKTRLQAARGGSQIQWKGLYSGLA 64
G + + FNFLQ+L LYPIDTIKTRLQAA+GGS+IQWKGLY+GL
Sbjct: 4 GGDGRSFNFLQVLFEGVIAGGAAGVVVETALYPIDTIKTRLQAAKGGSKIQWKGLYAGLG 63
Query: 65 GNIAGVLPASAVFVGIYEPTKRKLLETFPENLSAVAHFTXXXXXXXXXSLIRVPTEVVKQ 124
GNIAGVLPASA+F+G+YEPTKRKLLE FPENLSAVAH T SLIRVPTEVVKQ
Sbjct: 64 GNIAGVLPASAIFIGVYEPTKRKLLEMFPENLSAVAHLTAGAIGGAASSLIRVPTEVVKQ 123
Query: 125 RMQTGQFRSAPDAVRLIVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKVVAK 184
RMQ QF++APDAVRLI+ KEGF+GLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYK+ AK
Sbjct: 124 RMQMSQFKTAPDAVRLIIRKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAK 183
Query: 185 RELNDPENXXXXXXXXXXXXXXXXPLDVMKTRLMVQGSANQYSGIVSCAQTILREEGPGA 244
R+L D EN PLDV+KTRLMVQG ANQY GI+SCAQTILREEG GA
Sbjct: 184 RDLKDGENALIGAFAGAITGAITTPLDVLKTRLMVQGQANQYRGIISCAQTILREEGAGA 243
Query: 245 FLKGIEPRVLWIGIGGSIFFGVLEKTKSMLAERRSRE 281
FLKGIEPRVLWIGIGGSIFFGVLEKTKS+LAER SR+
Sbjct: 244 FLKGIEPRVLWIGIGGSIFFGVLEKTKSILAERNSRK 280
>Os02g0665200 Mitochondrial substrate carrier family protein
Length = 618
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 121/257 (47%), Gaps = 17/257 (6%)
Query: 35 LYPIDTIKTRLQAARGGSQIQWK------------GLYSGLAGNIAGVLPASAVFVGIYE 82
L+PIDT+KT +Q + GLY GLA IA P SA++ YE
Sbjct: 351 LHPIDTVKTIIQVNSSRRSSFYHTLRRALVERGVLGLYGGLASKIACSAPISAIYTLTYE 410
Query: 83 PTKRKLLETFPENLSAVAHFTXXXXXXXXXSLIRVPTEVVKQRMQTG-QFRSAPDAVRLI 141
K LL P+ ++AH T S + P+E +KQ+MQ G Q+++ DA+
Sbjct: 411 IVKGSLLPILPKEYHSIAHCTAGGCSSIATSFVFTPSECIKQQMQVGSQYQNCWDALLGC 470
Query: 142 VGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLR--IGYKVVAKRELNDPENXXXXXXX 199
+ K G LYAG+G+ L R++P I+F YE L+ + A L+ +
Sbjct: 471 LRKGGITSLYAGWGAVLCRNIPHSVIKFYTYESLKQFMLKSAPANANLDSGQTLFCGGFA 530
Query: 200 XXXXXXXXXPLDVMKTRLMVQGSA--NQYSGIVSCAQTILREEGPGAFLKGIEPRVLWIG 257
P DV+KTR+ +Q + ++Y G++ + I + EG +G+ PR+
Sbjct: 531 GSTAALCTTPFDVVKTRVQLQALSPISKYDGVLHALKEIFQHEGLQGLYRGLAPRLAMYI 590
Query: 258 IGGSIFFGVLEKTKSML 274
G+IFF E K+++
Sbjct: 591 SQGAIFFTSYEFLKTIM 607
>Os11g0103700 Mitochondrial substrate carrier family protein
Length = 670
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 120/257 (46%), Gaps = 17/257 (6%)
Query: 35 LYPIDTIKTRLQAARGG--------SQIQWKGLYSGLAGNIAGVLPASAVFVGIYEPTK- 85
++PID++KTR+QA+ QI +GLY G I G + + GI+E +K
Sbjct: 402 MHPIDSMKTRVQASSLSFPDLISTLPQIGLRGLYRGSIPAILGQFSSHGLRTGIFEASKL 461
Query: 86 --RKLLETFPE-NLSAVAHFTXXXXXXXXXSLIRVPTEVVKQRMQTGQFRSAPDAVRLIV 142
+ + T P+ + +++ F + +R+P EV+KQR+Q G F + +A+ +
Sbjct: 462 VLKSVAPTLPDIQVQSLSSFCSTILG----TAVRIPCEVLKQRLQAGIFNNVGEAIVGTM 517
Query: 143 GKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKVVAKRELNDPENXXXXXXXXXX 202
K+G +G + G G+ L R++PF C+Y + + + V R+L E
Sbjct: 518 QKDGPKGFFRGTGATLCREVPFYVAGMCLYAEAKKAAQHVLNRDLEPWETIAVGALSGGL 577
Query: 203 XXXXXXPLDVMKTRLMVQGSANQYSGIVSCAQTILREEGPGAFLKGIEPRVLWIGIGGSI 262
P DVMKTR+M S + +ILR EGP KG PR WI G++
Sbjct: 578 AAVVTTPFDVMKTRMMTAPPGTPVS-MQLIVFSILRNEGPLGLFKGAIPRFFWIAPLGAM 636
Query: 263 FFGVLEKTKSMLAERRS 279
F E K + + S
Sbjct: 637 NFAGYELAKKAMIQTES 653
>Os12g0103000 Mitochondrial substrate carrier family protein
Length = 666
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 112/253 (44%), Gaps = 9/253 (3%)
Query: 35 LYPIDTIKTRLQAARGG--------SQIQWKGLYSGLAGNIAGVLPASAVFVGIYEPTKR 86
++PID++KTR+QA+ QI +GLY G I G + + GI+E +K
Sbjct: 398 MHPIDSMKTRVQASSLSFPDLISTLPQIGLRGLYRGSIPAILGQFSSHGLRTGIFEASKL 457
Query: 87 KLLETFPENLSAVAHFTXXXXXXXXXSLIRVPTEVVKQRMQTGQFRSAPDAVRLIVGKEG 146
L P + +R+P EV+KQR+Q G F + +A+ + K+G
Sbjct: 458 VLKSVAPTLSDIQVQSLSSFCSTILGTAVRIPCEVLKQRLQAGIFNNVGEAIVGTMQKDG 517
Query: 147 FRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKVVAKRELNDPENXXXXXXXXXXXXXX 206
+G + G G+ L R++PF C+Y + + + V R+L E
Sbjct: 518 PKGFFRGTGATLCREVPFYVAGMCLYAEAKKAAQHVLNRDLEPWETIAVGALSGGLAAVV 577
Query: 207 XXPLDVMKTRLMVQGSANQYSGIVSCAQTILREEGPGAFLKGIEPRVLWIGIGGSIFFGV 266
P DVMKTR+M S + +ILR EGP KG PR WI G++ F
Sbjct: 578 TTPFDVMKTRMMTAPPGTPVS-MQLIVFSILRNEGPLGLFKGAIPRFFWIAPLGAMNFAG 636
Query: 267 LEKTKSMLAERRS 279
E K + + S
Sbjct: 637 YELAKKAMIQTES 649
>Os03g0213800 Mitochondrial substrate carrier family protein
Length = 369
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 115/293 (39%), Gaps = 50/293 (17%)
Query: 35 LYPIDTIKTRLQ--AARGGSQIQ----------W-----KGLYSGLAGNIAGVLPASAVF 77
++P+DT+KTRLQ A G++ Q W KG Y G++ + G L A +
Sbjct: 54 MHPVDTLKTRLQSQAIITGAKAQKNIFQMIRTVWVSDGLKGFYRGISPGVTGSLATGATY 113
Query: 78 VGIYEPTKRKLLETFPENLSAVAHFTXXXXXXXXXSLIRVPTEVVKQRMQT--------- 128
G+ E TK L + P +HF S I VP EV+KQRMQ
Sbjct: 114 FGVIESTKTWLEHSNPNLSGHWSHFIAGGIGDTLGSFIYVPCEVMKQRMQVQGTKKSWAL 173
Query: 129 ----GQFRSAPDAVRL------------IVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIY 172
G P A I G +GLYAGY S L RD+PF + Y
Sbjct: 174 TATKGNISQTPGAPMYNYYNGMFHAGCSIWRDHGLKGLYAGYWSTLARDVPFAGLMVTFY 233
Query: 173 EQLRIGYKVVAKRELNDP--------ENXXXXXXXXXXXXXXXXPLDVMKTRLMVQGSAN 224
E ++ + ++ L + E PLDV+KTRL VQGS
Sbjct: 234 EAMKELTEYGKRKYLPESNLHASSSFEGLLLGGLAGGFSAYLTTPLDVIKTRLQVQGSTT 293
Query: 225 QYSGIVSCAQTILREEGPGAFLKGIEPRVLWIGIGGSIFFGVLEKTKSMLAER 277
Y+G + EG KG PR++W + F +E + E+
Sbjct: 294 SYNGWLDAITKTWANEGMSGLFKGSIPRIIWYIPASAFTFMAVEFLRDHFNEK 346
>Os01g0964900 Similar to Mitochondrial carrier protein-like
Length = 360
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 107/236 (45%), Gaps = 22/236 (9%)
Query: 35 LYPIDTIKTRLQ--AARGGSQIQWK------------GLYSGLAGNIAGVLPASAVFVGI 80
L PID +KTR+Q AA GGS W+ GLY GL+ I G +SAV+ G
Sbjct: 88 LLPIDAVKTRIQAGAAAGGS---WQVFLDILRTDGPLGLYRGLSAVILGSASSSAVYFGT 144
Query: 81 YEPTKRKLLETFPENLSAVAHFTXXXXXXXXXSLIRVPTEVVKQRMQTGQFRSAPDAVRL 140
E K L P L S I VP E++ QR+Q+G + V L
Sbjct: 145 CELAKSLLRPHLPPFLVPP---LAGASGNVSSSAIMVPKELITQRLQSGAAKGRSWQVLL 201
Query: 141 -IVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLR-IGYKVVAKRELNDPENXXXXXX 198
I+ +GF GLYAGY + LLR+LP + + +E L+ K K L E+
Sbjct: 202 QILQTDGFFGLYAGYAATLLRNLPAGVLSYSSFEYLKAFTLKQRNKESLTPGESVLCGAL 261
Query: 199 XXXXXXXXXXPLDVMKTRLMVQGSANQYSGIVSCAQTILREEGPGAFLKGIEPRVL 254
PLDV+KTRLM + +V + ++ EEG +GI PRVL
Sbjct: 262 AGAISAALTTPLDVVKTRLMTRVGTEGSRTVVGTMREVVAEEGLMGLSRGIGPRVL 317
>AK107228
Length = 320
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 36/281 (12%)
Query: 36 YPIDTIKTRLQAARGGSQIQWK------------------GLYSGLAGNIAGVLPASAVF 77
+P+DTIK R+Q +R G + K GLY GL +AG++P A+
Sbjct: 31 HPLDTIKVRMQLSRRGKKAGEKPRGFIATGAHIIKRETPLGLYKGLGAVVAGIVPKMAIR 90
Query: 78 VGIYEPTKRKLLETFPENLSAVAHFTXXXXXXXXXSLIRV-PTEVVKQRMQTGQ------ 130
+E K L + SA F ++ V P EVVK R+Q Q
Sbjct: 91 FMSFEQYKAALADKDTGKTSARGVFLAGLGAGTTEAVAVVNPMEVVKIRLQAQQHSLADP 150
Query: 131 -----FRSAPDAVRLIVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLR-IGYKVVAK 184
+R+A A+ I+ +EGF LY G R A F Y++L+ + +V
Sbjct: 151 LEVPRYRNAAHALYTIIREEGFMTLYRGVALTAARQATNQAANFTAYQELKGLAQRVHGT 210
Query: 185 RELNDPENXXXXXXXXXXXXXXXXPLDVMKTRLM----VQGSANQYSGIVSCAQTILREE 240
EL E P+D +KTR+ V+G S +V A+ + +E
Sbjct: 211 SELPSYETALIGLISGALGPFSNAPIDTIKTRIQRASKVEGE-TAVSRVVKVAKDMFAQE 269
Query: 241 GPGAFLKGIEPRVLWIGIGGSIFFGVLEKTKSMLAERRSRE 281
G AF KGI PRV + G ++ F + EK KS + ++ E
Sbjct: 270 GASAFWKGITPRVARVAPGQAVVFTIYEKVKSYIEAAKTGE 310
>Os03g0296800 Mitochondrial substrate carrier family protein
Length = 328
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 109/262 (41%), Gaps = 23/262 (8%)
Query: 35 LYPIDTIKTRLQA----------------ARGGSQIQWKGLYSGLAGNIAGVLPASAVFV 78
++P+DT+KT +QA A + + LY GL G PA AV+
Sbjct: 59 MFPVDTLKTHMQAGAPPCRPVLSLGAVLRAAVSGEGGVRALYRGLPAMALGAGPAHAVYF 118
Query: 79 GIYEPTKRKLLETFPENLSAVAHFTXXXXXXXXXSLIRVPTEVVKQRMQ--TGQFRSAPD 136
+YE K +L E N A AH + P + VKQR+Q + +
Sbjct: 119 SVYEFAKSRLSERLGPNNPA-AHAASGVLATIASDAVFTPMDTVKQRLQLTSSPYTGVSH 177
Query: 137 AVRLIVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKVVAKRELNDPENXXXX 196
VR ++ EG +A Y + ++ + P+ A+ F YE + +A E + +
Sbjct: 178 CVRTVLRDEGLGAFFASYRTTVVMNAPYTAVHFATYEAAKRMLGDMATNEDSLAVHATAG 237
Query: 197 XXXXXXXXXXXXPLDVMKTRLMVQGSAN----QYSGIVSCAQTILREEGPGAFLKGIEPR 252
PLDV+KT+L QG S I +TI++ +G ++G +PR
Sbjct: 238 AAAGALAAAVTTPLDVVKTQLQCQGVCGCERFSSSSIGDVFRTIIKRDGYAGLMRGWKPR 297
Query: 253 VLWIGIGGSIFFGVLEKTKSML 274
+L+ +I + E +KS
Sbjct: 298 MLFHAPAAAICWSTYEASKSFF 319
>Os01g0143100 Mitochondrial substrate carrier family protein
Length = 322
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 22/236 (9%)
Query: 56 WKGLYSGLAGNIAGVLPASAVFVGIYEPTKRKLLETFP-----ENLSAVAHFTXXXXXXX 110
WKG I LP SA+ YE K K L+ P N VA
Sbjct: 87 WKGNLV----TIVHRLPYSAISFYSYERYK-KFLQRVPGLDEDSNYVGVARLLSGGLAGI 141
Query: 111 XXSLIRVPTEVVKQRMQTGQ----FRSAPDAVRLIVGKEGFRGLYAGYGSFLLRDLPFDA 166
+ + P +VV+ R+ T + ++ AV I EG +GLY G G+ LL P A
Sbjct: 142 TAASVTYPLDVVRTRLATQKTTRYYKGIFHAVSTICRDEGVKGLYKGLGATLLGVGPSIA 201
Query: 167 IQFCIYEQLRIGYKVVAKRELNDPE--NXXXXXXXXXXXXXXXXPLDVMKTRLMVQGSAN 224
I F +YE LR +++ +R + P + PLD++K R+ +QG+A
Sbjct: 202 ISFTVYESLRSHWQM--ERPQDSPAVVSLFSGSLSGIASSTATFPLDLVKRRMQLQGAAG 259
Query: 225 QY----SGIVSCAQTILREEGPGAFLKGIEPRVLWIGIGGSIFFGVLEKTKSMLAE 276
S I + I ++EG F +GI P L + I F E KS+L+
Sbjct: 260 TSSVCKSSITGTIRQIFQKEGLRGFYRGIVPEYLKVVPSVGIAFMTYETLKSLLSS 315
>Os09g0497000 Mitochondrial substrate carrier family protein
Length = 391
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 113/285 (39%), Gaps = 41/285 (14%)
Query: 35 LYPIDTIKTRLQAARGGSQIQ-----------WKGLYSGLAGNIAGVLPASAVFVGIYEP 83
L P++TI+TR+ G I W+GL++G N+ ++P A+ +G +E
Sbjct: 109 LAPLETIRTRMVVGVGSRHIGGSFVEIIEQNGWQGLWAGNTINMIRIIPTQAIELGTFEC 168
Query: 84 TKRKLLET--------------------FPENLSAVAHFTXXXXXXXXXSLIRVPTEVVK 123
KR + E FP + +L+ P EV+K
Sbjct: 169 VKRTMAEAQEKWKEDGCPKIQIGKVKIEFPLQFLS-PVAVAGAAAGIAGTLVCHPLEVIK 227
Query: 124 QRMQTGQ--FRSAPDAVRLIVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGY-K 180
R+ + + S I +G RGLYAG L+ LP+ + +Y+ ++ Y +
Sbjct: 228 DRLTINREVYPSISVTFSKIYRTDGIRGLYAGLCPTLIGMLPYSTCYYFMYDTIKTSYCR 287
Query: 181 VVAKRELNDPENXXXXXXXXXXXXXXXXPLDVMKTRLMV---QGSANQYSGIVSCAQTIL 237
+ K L PE PL+V + RLMV QG + +++ ++
Sbjct: 288 LHKKTSLTRPELLVIGALSGLTASTISFPLEVARKRLMVGALQGKCPPH--MIAALAEVI 345
Query: 238 REEGPGAFLKGIEPRVLWIGIGGSIFFGVLEKTKS-MLAERRSRE 281
+EEG +G L + I + E K +LA++ R+
Sbjct: 346 QEEGLPGLYRGWGASCLKVMPNSGITWMFYEACKDILLADKDKRK 390
>Os11g0707800 Uncoupling protein
Length = 301
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 37 PIDTIKTRLQAAR---GGSQIQWKGLYSGLAGNIA----------GVLPA-------SAV 76
P+DT K RLQ + + +++GL G A IA G++P +
Sbjct: 32 PLDTAKVRLQLQKNVAADAAPKYRGLL-GTAATIAREEGAAALWKGIVPGLHRQCIYGGL 90
Query: 77 FVGIYEPTK-----RKLLETFPENLSAVAHFTXXXXXXXXXSLIRVPTEVVKQRMQTG-- 129
+G+YEP K + + P A FT I PT++VK R+Q
Sbjct: 91 RIGLYEPVKSFYVGKDHVGDVPLTKKIAAGFTTGAIAIS----IANPTDLVKVRLQAEGK 146
Query: 130 -------QFRSAPDAVRLIVGKEGFRGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKVV 182
++ A DA IV +EGF L+ G G + R+ +A + Y+Q++ +
Sbjct: 147 LAPGAPRRYAGAMDAYAKIVRQEGFAALWTGIGPNVARNAIINAAELASYDQVKQTILKL 206
Query: 183 AKRELNDPENXXXXXXXXXXXXXXXXPLDVMKTRLMVQGSANQYSGIVSCAQTILREEGP 242
+ + + P+DV+K+R+M + Y+ + C L+ +GP
Sbjct: 207 PGFKDDVVTHLLSGLGAGFFAVCVGSPVDVVKSRMM---GDSAYTSTIDCFVKTLKNDGP 263
Query: 243 GAFLKGIEPRVLWIGIGGSIFFGVLEKTKSMLAER 277
AF KG P +G I F LE+ + + +
Sbjct: 264 LAFYKGFLPNFARLGSWNVIMFLTLEQVQKLFVRK 298
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,291,999
Number of extensions: 287560
Number of successful extensions: 946
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 922
Number of HSP's successfully gapped: 13
Length of query: 288
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 188
Effective length of database: 11,814,401
Effective search space: 2221107388
Effective search space used: 2221107388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)