BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0252100 Os05g0252100|Os05g0252100
(488 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0252100 Protein of unknown function DUF620 family protein 701 0.0
Os03g0267500 Protein of unknown function DUF620 family protein 378 e-105
Os03g0606100 Protein of unknown function DUF620 family protein 281 1e-75
Os03g0167400 Protein of unknown function DUF620 family protein 239 5e-63
Os07g0591100 Protein of unknown function DUF620 family protein 192 7e-49
Os10g0411000 150 2e-36
Os12g0581300 Protein of unknown function DUF620 family protein 131 1e-30
Os10g0411100 Protein of unknown function DUF620 family protein 67 3e-11
>Os05g0252100 Protein of unknown function DUF620 family protein
Length = 488
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/468 (77%), Positives = 361/468 (77%)
Query: 1 MRKVCPNLDREDGLDTVLEVPVPELHRQAPXXXXXXXXXXTVKSWVRARMEHGRRRDGAA 60
MRKVCPNLDREDGLDTVLEVPVPELHRQAP TVKSWVRARMEHGRRRDGAA
Sbjct: 1 MRKVCPNLDREDGLDTVLEVPVPELHRQAPRRRGRRGGGGTVKSWVRARMEHGRRRDGAA 60
Query: 61 PSRAEVQLMLGVVGAPLVPQAVEARKAMVAXXXXXXXXXXPLDLEASKARYIVEQYVXXX 120
PSRAEVQLMLGVVGAPLVPQAVEARKAMVA PLDLEASKARYIVEQYV
Sbjct: 61 PSRAEVQLMLGVVGAPLVPQAVEARKAMVAGRGVGGEGEEPLDLEASKARYIVEQYVAAA 120
Query: 121 XXXXXXXXXTSMYAMGKVRMRTTTTSXXXXXXXXXXXXXXXXXXXXXXWQKKPDLWCVEM 180
TSMYAMGKVRMRTTTTS WQKKPDLWCVEM
Sbjct: 121 GGEAALGAATSMYAMGKVRMRTTTTSKANKGKVMGVAAGGEVAGGFVVWQKKPDLWCVEM 180
Query: 181 VVAGGVKMSAGSDGKVAWRQTPWQEAHASRGPPRPLRRCIQGLDPKSTADLFSSAAWVGE 240
VVAGGVKMSAGSDGKVAWRQTPWQEAHASRGPPRPLRRCIQGLDPKSTADLFSSAAWVGE
Sbjct: 181 VVAGGVKMSAGSDGKVAWRQTPWQEAHASRGPPRPLRRCIQGLDPKSTADLFSSAAWVGE 240
Query: 241 RCVDGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYFSQRTGLLVRLEDSHLLRIGLA 300
RCVDGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYFSQRTGLLVRLEDSHLLRIGLA
Sbjct: 241 RCVDGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYFSQRTGLLVRLEDSHLLRIGLA 300
Query: 301 HAAAESAYWETTMESSIGDYRAVDGINIAHAGRTAVSLSRFESXXXXXXXXRGSNKRSWG 360
HAAAESAYWETTMESSIGDYRAVDGINIAHAGRTAVSLSRFES RGSNKRSWG
Sbjct: 301 HAAAESAYWETTMESSIGDYRAVDGINIAHAGRTAVSLSRFESADDAAAAARGSNKRSWG 360
Query: 361 TTTMEETWSIEEVDFNVVGLSMDCFLPPRDLVLNDCSKQQQKEXXXXXXXXXXXXXXXXX 420
TTTMEETWSIEEVDFNVVGLSMDCFLPPRDLVLNDCSKQQQKE
Sbjct: 361 TTTMEETWSIEEVDFNVVGLSMDCFLPPRDLVLNDCSKQQQKEDAAAAVVVKDAAAAVDV 420
Query: 421 XXXXXXXXXXXXXXXXXXTNXXXXXXXXXXKKALVPAVTGLGWFGPAK 468
TN KKALVPAVTGLGWFGPAK
Sbjct: 421 KDAAGAAANAKGGSDDGKTNGGDVGRGVVVKKALVPAVTGLGWFGPAK 468
>Os03g0267500 Protein of unknown function DUF620 family protein
Length = 441
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/407 (50%), Positives = 252/407 (61%), Gaps = 32/407 (7%)
Query: 1 MRKVCPNLDREDGLDTVLEVPVPE----LHRQAPXXXXXXXXXXTVKSWVR--ARMEHGR 54
MRK+CPNL+R+D LDTVLEVP+PE VKSWVR A G
Sbjct: 1 MRKLCPNLERDDALDTVLEVPIPEEMFSRGSGGGGSRGSRFGCTNVKSWVRPNASDRSGG 60
Query: 55 RRDGAAPSRAEVQLMLGVVGAPLVPQAVEARKAMVAXXXXXXXXXXPLDLEASKARYIVE 114
+ + SR E+QLMLGV+GAPL+P V+ K P+ E+S A+YI++
Sbjct: 61 AGEPCSMSRGELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPI--ESSTAKYIIQ 118
Query: 115 QYVXXXXXXXXXXXXTSMYAMGKVRMRTTTTSXXXXXXXXXXXXXXXXXXXXXX------ 168
QY+ T+MYAMGKVRM +
Sbjct: 119 QYIAASGGEWALNKVTNMYAMGKVRMTAAELNSSDADGGGGGGGGHRGGKKSSKNGGEVG 178
Query: 169 ----WQKKPDLWCVEMVVAGGVKMSAGSDGKVAWRQTPWQEAHASRGPPRPLRRCIQGLD 224
WQKKP+LW +E+VV+G K+SAGSDGKVAWRQTPW ++HASRGPPRPLRR +QGLD
Sbjct: 179 GFVLWQKKPELWSLELVVSG-CKISAGSDGKVAWRQTPWHQSHASRGPPRPLRRSLQGLD 237
Query: 225 PKSTADLFSSAAWVGERCVDGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYFSQRTG 284
P TA LF+ A +GER VDG+DCFVL+V+A+ ++LRAR+S VE++RH V GYFSQRTG
Sbjct: 238 PMLTASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRTG 297
Query: 285 LLVRLEDSHLLRIGLAHAAAESAYWETTMESSIGDYRAVDGINIAHAGRTAVSLSRFESX 344
LLV+LEDSHLL+I + S +WETTMES + DYRAVDG+NIAHAGRTAVSL RF
Sbjct: 298 LLVQLEDSHLLQI--KSSGHGSVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRF--- 352
Query: 345 XXXXXXXRGSNKRSWGTTTMEETWSIEEVDFNVVGLSMDCFLPPRDL 391
G + T MEE W+IEEVDFN+ GLSMDCFLPP DL
Sbjct: 353 --------GDSSDGNTRTRMEEVWNIEEVDFNIWGLSMDCFLPPSDL 391
>Os03g0606100 Protein of unknown function DUF620 family protein
Length = 792
Score = 281 bits (718), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/329 (44%), Positives = 195/329 (59%), Gaps = 19/329 (5%)
Query: 63 RAEVQLMLGVVGAPLVPQAVEARKAMVAXXXXXXXXXXPLDLEASKARYIVEQYVXXXXX 122
R +++L+LGV+GAPL P V A + + +E S A+YI++QY+
Sbjct: 268 RNDLRLLLGVMGAPLAPVHVSAAEPLPHLSIKDT------PIETSSAQYILQQYLAASGG 321
Query: 123 XXXXXXXTSMYAMGKVRMRTTTTSXXXXXXXXXXXXXXXXXXXXXXWQKKPDLWCVEMVV 182
+ Y MGKVRM T WQ P++W +E+ V
Sbjct: 322 QKLLASVRNAYTMGKVRMVATEFETAGRLVKNRNAARCAEPGRFVLWQMAPEMWYIELAV 381
Query: 183 AGGVKMSAGSDGKVAWRQTPWQEAHASRGPPRPLRRCIQGLDPKSTADLFSSAAWVGERC 242
GG K+ AG +GK+ WR TPW AHA++GP RPLRR +QGLDP +TA +F+ A +GER
Sbjct: 382 -GGSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPLTTASMFAGARCIGERK 440
Query: 243 VDGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYFSQRTGLLVRLEDSHLLRIGLAHA 302
V+G+DCF+L++ + L+ARS G E++RH + GYFSQRTGLLV +EDSHL RI +
Sbjct: 441 VNGEDCFILKLCTEPETLKARSEGLAEIIRHVMFGYFSQRTGLLVHIEDSHLTRIQ-STT 499
Query: 303 AAESAYWETTMESSIGDYRAVDGINIAHAGRTAVSLSRFESXXXXXXXXRGSNKRSWGTT 362
++ YWETT+ S I DYR V+GI IAH+GR+AV+L RF G S T
Sbjct: 500 GGDAVYWETTINSFIEDYRPVEGIMIAHSGRSAVTLFRF-----------GEVAMSHTKT 548
Query: 363 TMEETWSIEEVDFNVVGLSMDCFLPPRDL 391
MEE WSIEEV FNV GLSMDCF+PP D+
Sbjct: 549 RMEEAWSIEEVAFNVPGLSMDCFIPPTDI 577
>Os03g0167400 Protein of unknown function DUF620 family protein
Length = 366
Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 141/332 (42%), Positives = 189/332 (56%), Gaps = 34/332 (10%)
Query: 64 AEVQLMLGVVGAPLVPQAVEARKAMVAXXXXXXXXXXPLDLEASKARYIVEQYVXXXXXX 123
A+++++L V+ PL P + R P + AS A+YI+EQ+
Sbjct: 52 ADLRVLLSVLACPLSPVPILPR--------------LPRHV-ASSAQYIIEQFRATTGCG 96
Query: 124 XXXXXXTSMYAMGKVRMRTTTTSXXXXXXXXXXXXXXXXXXXXXXWQKKPDLWCVEMVVA 183
SMYA G+VR+ WQ P +W VEM VA
Sbjct: 97 KIEGAVKSMYAAGRVRL-AMLQDPAGGGAGGGGGGGRGHEGSFVMWQLAPSMWIVEMAVA 155
Query: 184 GGVKMSAGSDGKVAWRQTPWQEAHASRGPPRPLRRCIQGLDPKSTADLFSSAAWVGERCV 243
G ++AGSDG+VAWR+TPW AHA+RG RPLRR +QGLDP + A +FS+A GE+ V
Sbjct: 156 GQ-HVAAGSDGRVAWRRTPWVGAHAARGGSRPLRRALQGLDPVTIAAIFSTAEHAGEKLV 214
Query: 244 DGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYFSQRTGLLVRLEDSHLLRIGLAHAA 303
DG+DCFVLR+D + L + S G EV+RH + G+FSQR+GLLVRLEDS L RI AA
Sbjct: 215 DGEDCFVLRLDVGPSVLSSWSDGTAEVIRHGLTGFFSQRSGLLVRLEDSQLTRIQSPGAA 274
Query: 304 AESAYWETTMESSIGDYRAVD---GINIAHAGRTAVSLSRFESXXXXXXXXRGSNKRSWG 360
A YWETT+ SS+ DYRAVD G+++AH+GR+ L+RF G R+
Sbjct: 275 A--MYWETTISSSLADYRAVDGGGGVHVAHSGRSTAHLARF-----------GVGVRAAR 321
Query: 361 TTT-MEETWSIEEVDFNVVGLSMDCFLPPRDL 391
T MEE+W+I++V FNV GL D F+PP ++
Sbjct: 322 VVTRMEESWTIDDVAFNVPGLGPDAFIPPEEV 353
>Os07g0591100 Protein of unknown function DUF620 family protein
Length = 380
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 122/177 (68%), Gaps = 12/177 (6%)
Query: 215 PLRRCIQGLDPKSTADLFSSAAWVGERCVDGDDCFVLRVDADHAALRARSSGDVEVVRHA 274
PL +QGLDP +TA LF+ A VGE+ V+G+DCF+L++ AD L+ RS G E++RH
Sbjct: 157 PLLATMQGLDPLTTAGLFAEARCVGEKKVNGEDCFILKLSADPQTLKQRSEGPAEIIRHV 216
Query: 275 VLGYFSQRTGLLVRLEDSHLLRIGLAHAAAESAYWETTMESSIGDYRAVDGINIAHAGRT 334
+ GYFSQRTGL+V +EDSHL RI H+ ++ YWETT+ S++ DYR V+GI IAHAGR+
Sbjct: 217 LFGYFSQRTGLIVHIEDSHLTRI-QPHSGGDAVYWETTISSALEDYRPVEGIMIAHAGRS 275
Query: 335 AVSLSRFESXXXXXXXXRGSNKRSWGTTTMEETWSIEEVDFNVVGLSMDCFLPPRDL 391
AV+L RF G S T MEE WSIEEV FNV GLS+DCF+PP D+
Sbjct: 276 AVTLFRF-----------GEAAMSHTKTRMEEAWSIEEVAFNVPGLSVDCFIPPADI 321
>Os10g0411000
Length = 220
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 107/172 (62%), Gaps = 12/172 (6%)
Query: 220 IQGLDPKSTADLFSSAAWVGERCVDGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYF 279
+ GLDP + A +FS+A VGE+ VDG+DCF LR+D + L A G EV+RH + GYF
Sbjct: 37 VHGLDPVTIASVFSAAEHVGEKAVDGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYF 96
Query: 280 SQRTGLLVRLEDSHLLRIGLAHAAAESAYWETTMESSIGDYRAVDGINIAHAGRTAVSLS 339
SQR+GLL RL+DS L RI A A YWETT+ S +GDYRA DG +AHAG + L+
Sbjct: 97 SQRSGLLARLDDSQLTRIQTPGAPA--MYWETTVSSRLGDYRAADGAVVAHAGTSVAHLA 154
Query: 340 RFESXXXXXXXXRGSNKRSWGTTTMEETWSIEEVDFNVVGLSMDCFLPPRDL 391
RF + G+ + T MEE W+I++V FNV GL + F+ P ++
Sbjct: 155 RFGADV-------GAAR---AVTRMEEAWTIDDVAFNVAGLCPESFIAPEEV 196
>Os12g0581300 Protein of unknown function DUF620 family protein
Length = 158
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 80/120 (66%), Gaps = 12/120 (10%)
Query: 272 RHAVLGYFSQRTGLLVRLEDSHLLRIGLAHAAAESAYWETTMESSIGDYRAVDGINIAHA 331
RH + GYFSQ+TGLLV LEDSHL RI + ++ YWETT+ S I DYR V+GI +AHA
Sbjct: 1 RHVLFGYFSQKTGLLVHLEDSHLTRIQ-STTGGDAVYWETTINSFIEDYRPVEGIMVAHA 59
Query: 332 GRTAVSLSRFESXXXXXXXXRGSNKRSWGTTTMEETWSIEEVDFNVVGLSMDCFLPPRDL 391
GR+AV+L RF G S T MEE WSIEEV FNV GLS+DCF+PP D+
Sbjct: 60 GRSAVTLFRF-----------GEVAMSHTKTRMEEAWSIEEVAFNVPGLSIDCFIPPTDI 108
>Os10g0411100 Protein of unknown function DUF620 family protein
Length = 216
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 65 EVQLMLGVVGAPLVPQAVEARKAMVAXXXXXXXXXXPLDLEASKARYIVEQYVXXXXXXX 124
+++++L V+ PL P V R P ++ AS A+YI+EQ+
Sbjct: 65 DLRVLLSVLACPLSPVPVLPRH--------------PRNV-ASSAQYILEQFRATTGCAK 109
Query: 125 XXXXXTSMYAMGKVRMRTTTTSXXXXXXXXXXXXXXXXXXXXXXWQKKPDLWCVEMVVAG 184
SMYA G+VRM WQ PD+W VEM VAG
Sbjct: 110 IEGAAKSMYAAGRVRM--AMAPEPGGGIGIGGGGGGGHEGCFVVWQLVPDMWLVEMAVAG 167
Query: 185 GVKMSAGSDGKVAWRQTPWQEAHASR-GPPRPLRRCIQGLDPKSTA 229
+ DG+VAWR+TPW +AHA+R G RPLRR +Q P A
Sbjct: 168 HAVAAG-CDGRVAWRRTPWLDAHAARGGGARPLRRALQVGTPHVPA 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,953,038
Number of extensions: 475689
Number of successful extensions: 1057
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 9
Length of query: 488
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 383
Effective length of database: 11,553,331
Effective search space: 4424925773
Effective search space used: 4424925773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)