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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0411000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.25 (0.0413) R2 : 0.419
β1 : -1.49 (0.155) R2dD : 0.131 R2D : 0.049
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.35 (0.148) R2dE : 0.365 R2E : 0.285
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0357 (0.0911) R2dN8 : 0.00028 R2N8 : 0.00648
σ : 0.766
deviance : 270.55
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.4
memory length : 740
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.57 0.744 5.34 -2.21 0.0359 2.58 -2.21 -3.8 -0.162 11.5 22.14 750 -- --
256.96 0.747 5.28 -1.43 0.0501 2.46 -1.9 -- -0.0297 12.6 21.3 736 -- --
263.96 0.757 5.3 -1.83 0.59 2.24 -- -1.23 -0.0251 17.4 21.73 907 -- --
264.5 0.757 5.26 -1.48 0.565 2.13 -- -- 0.052 17.5 21.5 920 -- --
269.31 0.764 5.29 -1.78 -- 2.46 -- -1.41 -0.0398 -- 21.7 740 -- --
366.18 0.897 5.18 -0.816 0.879 -- 1.91 -- 0.453 20.6 -- -- -- --
376.08 0.908 5.18 -0.87 0.912 -- -- -- 0.458 19.8 -- -- -- --
270.55 0.766 5.25 -1.49 -- 2.35 -- -- 0.0357 -- 21.4 740 -- --
317.09 0.829 5.21 -- 0.664 1.69 -- -- 0.305 18.1 22.03 945 -- --
421.19 0.959 5.16 -0.88 -- -- -- -- 0.445 -- -- -- -- --
396.01 0.931 5.16 -- 0.919 -- -- -- 0.555 19.8 -- -- -- --
325.04 0.84 5.2 -- -- 2 -- -- 0.264 -- 21.87 716 -- --
441.63 0.981 5.14 -- -- -- -- -- 0.543 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 245.79 temperature 25.0 720 > th dose independent rect. 6 18
2 246.01 wind 5.0 43200 > th dose dependent rect. 13 1
6 248.38 wind 5.0 43200 > th dose dependent rect. 12 3
11 249.02 wind 7.0 43200 < th dose independent rect. 12 7
12 249.06 wind 7.0 43200 > th dose independent rect. 12 7
36 250.35 wind 7.0 43200 < th dose independent rect. 13 3
42 250.70 wind 7.0 43200 > th dose independent rect. 13 3
50 250.95 wind 5.0 43200 > th dose dependent rect. 11 7
52 251.00 wind 5.0 43200 > th dose independent rect. 13 1
56 251.19 radiation 1.0 1440 < th dose dependent rect. 11 19
82 251.92 radiation 1.0 1440 < th dose independent rect. 11 19
94 252.43 radiation 1.0 1440 > th dose independent rect. 11 19
99 252.55 temperature 25.0 720 < th dose independent rect. 7 17
127 253.11 radiation 1.0 1440 < th dose dependent rect. 11 14
129 253.13 wind 7.0 43200 < th dose independent rect. 14 1
132 253.16 radiation 1.0 1440 < th dose dependent rect. 11 12
135 253.18 radiation 1.0 1440 < th dose dependent rect. 11 8
198 253.97 wind 7.0 43200 > th dose independent sin 20 NA
202 254.08 temperature 20.0 720 > th dose dependent rect. 12 19
204 254.12 wind 7.0 43200 < th dose independent sin 20 NA
228 254.45 radiation 1.0 1440 < th dose dependent sin 17 NA
229 254.46 wind 9.0 14400 > th dose independent rect. 11 1
233 254.48 radiation 1.0 1440 > th dose independent rect. 11 8
244 254.52 radiation 1.0 1440 < th dose independent rect. 11 14
248 254.58 radiation 1.0 1440 < th dose independent rect. 11 8
249 254.58 radiation 1.0 1440 < th dose independent rect. 11 12
252 254.60 temperature 20.0 720 > th dose dependent rect. 12 17
287 254.78 temperature 20.0 720 > th dose dependent rect. 3 22
339 255.26 wind 7.0 43200 < th dose independent rect. 17 1
417 255.93 temperature 25.0 1440 > th dose independent rect. 11 12
428 255.94 wind 9.0 14400 > th dose dependent rect. 11 1
442 256.06 radiation 1.0 1440 > th dose independent sin 17 NA
444 256.07 radiation 1.0 1440 < th dose independent sin 17 NA
472 256.32 temperature 25.0 1440 < th dose independent rect. 11 12
494 256.55 temperature 25.0 720 > th dose independent sin 20 NA
514 256.71 temperature 20.0 720 > th dose dependent rect. 6 23
521 256.79 radiation 1.0 14400 < th dose dependent rect. 9 1
533 256.85 temperature 25.0 1440 < th dose independent rect. 15 8
534 256.85 wind 7.0 43200 > th dose dependent rect. 11 16
548 256.97 temperature 10.0 720 > th dose dependent rect. 12 17
559 257.08 temperature 20.0 720 > th dose dependent rect. 21 23
569 257.18 temperature 25.0 1440 > th dose dependent rect. 11 7
580 257.19 temperature 25.0 1440 > th dose dependent rect. 15 2
592 257.25 wind 7.0 43200 > th dose independent rect. 11 19
593 257.25 precipitation 0.1 14400 > th dose dependent rect. 3 5
603 257.31 temperature 30.0 720 < th dose dependent rect. 9 18
628 257.52 precipitation 0.1 14400 > th dose independent rect. 3 5
634 257.56 temperature 25.0 1440 > th dose independent rect. 15 8
635 257.56 temperature 20.0 720 > th dose dependent no NA NA
682 257.83 wind 7.0 43200 > th dose dependent rect. 11 19
713 258.04 temperature 25.0 1440 < th dose independent sin 19 NA
760 258.35 precipitation 0.1 14400 < th dose independent rect. 3 5
761 258.35 precipitation 0.1 14400 < th dose dependent rect. 3 5
784 258.54 temperature 20.0 720 > th dose dependent sin 18 NA
807 258.70 temperature 25.0 1440 < th dose independent rect. 16 3
837 258.86 temperature 20.0 720 > th dose dependent rect. 17 23
881 259.11 wind 7.0 43200 > th dose independent rect. 17 1
882 259.12 temperature 25.0 1440 > th dose independent rect. 16 3
893 259.18 temperature 25.0 1440 > th dose dependent sin 20 NA