BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0411000 Os10g0411000|Os10g0411000
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0411000 405 e-113
Os03g0167400 Protein of unknown function DUF620 family protein 253 5e-68
Os03g0606100 Protein of unknown function DUF620 family protein 176 1e-44
Os07g0591100 Protein of unknown function DUF620 family protein 169 2e-42
Os03g0267500 Protein of unknown function DUF620 family protein 158 3e-39
Os05g0252100 Protein of unknown function DUF620 family protein 150 5e-37
Os12g0581300 Protein of unknown function DUF620 family protein 121 4e-28
>Os10g0411000
Length = 220
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/220 (91%), Positives = 202/220 (91%)
Query: 1 MEMEHIIVPMSEYRQCICTNEKRPRVHADEVSVLTIVHGLDPVTIASVFSAAEHVGEKAV 60
MEMEHIIVPMSEYRQCICTNEKRPRVHADEVSVLTIVHGLDPVTIASVFSAAEHVGEKAV
Sbjct: 1 MEMEHIIVPMSEYRQCICTNEKRPRVHADEVSVLTIVHGLDPVTIASVFSAAEHVGEKAV 60
Query: 61 DGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYFSQRSGLLARLDDSQLTRIQTPGAP 120
DGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYFSQRSGLLARLDDSQLTRIQTPGAP
Sbjct: 61 DGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYFSQRSGLLARLDDSQLTRIQTPGAP 120
Query: 121 AMYWETTVSSRLGDYRAADGAVVAHAGTSVAHLARFGADVGAARAVTRMEEAWTIDDVAF 180
AMYWETTVSSRLGDYRAADGAVVAHAGTSVAHLARFGADVGAARAVTRMEEAWTIDDVAF
Sbjct: 121 AMYWETTVSSRLGDYRAADGAVVAHAGTSVAHLARFGADVGAARAVTRMEEAWTIDDVAF 180
Query: 181 NVAGLCPESFIAPEEVXXXXXXXXXXXXXXXXXXAIAKKK 220
NVAGLCPESFIAPEEV AIAKKK
Sbjct: 181 NVAGLCPESFIAPEEVRSGGGGGSSSRRYDGGGGAIAKKK 220
>Os03g0167400 Protein of unknown function DUF620 family protein
Length = 366
Score = 253 bits (647), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 123/163 (75%), Positives = 136/163 (83%), Gaps = 3/163 (1%)
Query: 37 VHGLDPVTIASVFSAAEHVGEKAVDGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYF 96
+ GLDPVTIA++FS AEH GEK VDGEDCF LRLDV PSVLS+W DG AEVIRHG+TG+F
Sbjct: 191 LQGLDPVTIAAIFSTAEHAGEKLVDGEDCFVLRLDVGPSVLSSWSDGTAEVIRHGLTGFF 250
Query: 97 SQRSGLLARLDDSQLTRIQTPGAPAMYWETTVSSRLGDYRAADGAV---VAHAGTSVAHL 153
SQRSGLL RL+DSQLTRIQ+PGA AMYWETT+SS L DYRA DG VAH+G S AHL
Sbjct: 251 SQRSGLLVRLEDSQLTRIQSPGAAAMYWETTISSSLADYRAVDGGGGVHVAHSGRSTAHL 310
Query: 154 ARFGADVGAARAVTRMEEAWTIDDVAFNVAGLCPESFIAPEEV 196
ARFG V AAR VTRMEE+WTIDDVAFNV GL P++FI PEEV
Sbjct: 311 ARFGVGVRAARVVTRMEESWTIDDVAFNVPGLGPDAFIPPEEV 353
>Os03g0606100 Protein of unknown function DUF620 family protein
Length = 792
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 114/161 (70%), Gaps = 2/161 (1%)
Query: 37 VHGLDPVTIASVFSAAEHVGEKAVDGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYF 96
+ GLDP+T AS+F+ A +GE+ V+GEDCF L+L P L A +G AE+IRH M GYF
Sbjct: 418 LQGLDPLTTASMFAGARCIGERKVNGEDCFILKLCTEPETLKARSEGLAEIIRHVMFGYF 477
Query: 97 SQRSGLLARLDDSQLTRIQ-TPGAPAMYWETTVSSRLGDYRAADGAVVAHAGTSVAHLAR 155
SQR+GLL ++DS LTRIQ T G A+YWETT++S + DYR +G ++AH+G S L R
Sbjct: 478 SQRTGLLVHIEDSHLTRIQSTTGGDAVYWETTINSFIEDYRPVEGIMIAHSGRSAVTLFR 537
Query: 156 FGADVGAARAVTRMEEAWTIDDVAFNVAGLCPESFIAPEEV 196
FG +V + TRMEEAW+I++VAFNV GL + FI P ++
Sbjct: 538 FG-EVAMSHTKTRMEEAWSIEEVAFNVPGLSMDCFIPPTDI 577
>Os07g0591100 Protein of unknown function DUF620 family protein
Length = 380
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Query: 33 VLTIVHGLDPVTIASVFSAAEHVGEKAVDGEDCFALRLDVAPSVLSAWGDGAAEVIRHGM 92
+L + GLDP+T A +F+ A VGEK V+GEDCF L+L P L +G AE+IRH +
Sbjct: 158 LLATMQGLDPLTTAGLFAEARCVGEKKVNGEDCFILKLSADPQTLKQRSEGPAEIIRHVL 217
Query: 93 TGYFSQRSGLLARLDDSQLTRIQT-PGAPAMYWETTVSSRLGDYRAADGAVVAHAGTSVA 151
GYFSQR+GL+ ++DS LTRIQ G A+YWETT+SS L DYR +G ++AHAG S
Sbjct: 218 FGYFSQRTGLIVHIEDSHLTRIQPHSGGDAVYWETTISSALEDYRPVEGIMIAHAGRSAV 277
Query: 152 HLARFGADVGAARAVTRMEEAWTIDDVAFNVAGLCPESFIAPEEV 196
L RFG + + TRMEEAW+I++VAFNV GL + FI P ++
Sbjct: 278 TLFRFG-EAAMSHTKTRMEEAWSIEEVAFNVPGLSVDCFIPPADI 321
>Os03g0267500 Protein of unknown function DUF620 family protein
Length = 441
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 37 VHGLDPVTIASVFSAAEHVGEKAVDGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYF 96
+ GLDP+ AS+F+ A +GE++VDGEDCF L+++ S L A + E+IRH + GYF
Sbjct: 233 LQGLDPMLTASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYF 292
Query: 97 SQRSGLLARLDDSQLTRIQTPGAPAMYWETTVSSRLGDYRAADGAVVAHAGTSVAHLARF 156
SQR+GLL +L+DS L +I++ G +++WETT+ S L DYRA DG +AHAG + L RF
Sbjct: 293 SQRTGLLVQLEDSHLLQIKSSGHGSVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRF 352
Query: 157 GADVGAARAVTRMEEAWTIDDVAFNVAGLCPESFIAPEEV 196
G D TRMEE W I++V FN+ GL + F+ P ++
Sbjct: 353 G-DSSDGNTRTRMEEVWNIEEVDFNIWGLSMDCFLPPSDL 391
>Os05g0252100 Protein of unknown function DUF620 family protein
Length = 488
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 107/172 (62%), Gaps = 12/172 (6%)
Query: 37 VHGLDPVTIASVFSAAEHVGEKAVDGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYF 96
+ GLDP + A +FS+A VGE+ VDG+DCF LR+D + L A G EV+RH + GYF
Sbjct: 220 IQGLDPKSTADLFSSAAWVGERCVDGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYF 279
Query: 97 SQRSGLLARLDDSQLTRIQTPGAPA--MYWETTVSSRLGDYRAADGAVVAHAGTSVAHLA 154
SQR+GLL RL+DS L RI A A YWETT+ S +GDYRA DG +AHAG + L+
Sbjct: 280 SQRTGLLVRLEDSHLLRIGLAHAAAESAYWETTMESSIGDYRAVDGINIAHAGRTAVSLS 339
Query: 155 RFGADV-------GAAR---AVTRMEEAWTIDDVAFNVAGLCPESFIAPEEV 196
RF + G+ + T MEE W+I++V FNV GL + F+ P ++
Sbjct: 340 RFESADDAAAAARGSNKRSWGTTTMEETWSIEEVDFNVVGLSMDCFLPPRDL 391
>Os12g0581300 Protein of unknown function DUF620 family protein
Length = 158
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 78/109 (71%), Gaps = 2/109 (1%)
Query: 89 RHGMTGYFSQRSGLLARLDDSQLTRIQ-TPGAPAMYWETTVSSRLGDYRAADGAVVAHAG 147
RH + GYFSQ++GLL L+DS LTRIQ T G A+YWETT++S + DYR +G +VAHAG
Sbjct: 1 RHVLFGYFSQKTGLLVHLEDSHLTRIQSTTGGDAVYWETTINSFIEDYRPVEGIMVAHAG 60
Query: 148 TSVAHLARFGADVGAARAVTRMEEAWTIDDVAFNVAGLCPESFIAPEEV 196
S L RFG +V + TRMEEAW+I++VAFNV GL + FI P ++
Sbjct: 61 RSAVTLFRFG-EVAMSHTKTRMEEAWSIEEVAFNVPGLSIDCFIPPTDI 108
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,933,195
Number of extensions: 267138
Number of successful extensions: 751
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 7
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)