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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0252100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF620 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.29 (0.0693) R2 : 0.324
β1 : -1.97 (0.256) R2dD : 0.0936 R2D : 0.0692
β2 : 1.68 (0.198) R2dC : 0.139 R2C : 0.208
β3 : -0.848 (0.184) R2dE : 0.0428 R2E : 0.095
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.103 (0.15) R2dN8 : 0.000974 R2N8 : -0.00172
σ : 1.29
deviance : 769.94
__
_____
C
peak time of C : 8.38
E
wheather : humidity
threshold : 87.9
memory length : 363
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
748.11 1.29 4.32 -1.92 1.64 -0.899 2.35 1.84 -0.0899 8.28 87.6 376 -- --
759.62 1.28 4.29 -1.99 1.7 -0.846 1.93 -- -0.113 8.51 88 340 -- --
764.09 1.29 4.32 -1.87 1.7 -0.827 -- 1.38 -0.0988 8.22 88 372 -- --
769.94 1.29 4.29 -1.97 1.68 -0.848 -- -- -0.103 8.38 87.9 363 -- --
861.45 1.37 4.31 -1.96 -- -1.94 -- 1.49 0.069 -- 87.8 515 -- --
789.12 1.32 4.3 -1.85 2.18 -- 1.66 -- -0.224 7.74 -- -- -- --
796.94 1.32 4.31 -1.81 2.19 -- -- -- -0.227 7.69 -- -- -- --
869.11 1.37 4.3 -2.08 -- -1.93 -- -- 0.0599 -- 87.94 516 -- --
869.82 1.37 4.25 -- 1.84 -0.571 -- -- 0.0662 8.26 87.4 328 -- --
1054.63 1.52 4.36 -1.78 -- -- -- -- -0.195 -- -- -- -- --
883.35 1.39 4.26 -- 2.17 -- -- -- -0.0257 7.75 -- -- -- --
982.16 1.46 4.29 -- -- -1.68 -- -- 0.109 -- 84.9 524 -- --
1138.38 1.57 4.31 -- -- -- -- -- 0.00233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 724.44 wind 1 43200 < th dose dependent rect. 16 2
2 726.17 wind 1 43200 < th dose independent rect. 16 2
3 726.17 radiation 30 43200 < th dose independent rect. 17 9
4 726.24 wind 1 43200 > th dose independent rect. 15 5
5 726.39 wind 1 43200 < th dose independent rect. 15 5
6 726.79 wind 1 43200 > th dose independent rect. 16 2
13 728.39 radiation 20 43200 < th dose independent rect. 5 1
21 729.90 wind 1 43200 < th dose dependent rect. 13 6
24 730.41 humidity 70 43200 < th dose dependent rect. 22 13
25 730.42 humidity 70 43200 < th dose dependent rect. 20 15
39 731.92 humidity 60 43200 < th dose independent rect. 18 18
48 732.74 radiation 30 43200 < th dose independent rect. 17 6
49 732.79 humidity 60 43200 > th dose independent rect. 19 17
51 732.84 humidity 60 43200 < th dose dependent rect. 17 18
76 733.92 radiation 40 43200 < th dose independent rect. 15 18
85 734.24 humidity 60 43200 < th dose independent sin 9 NA
92 734.43 radiation 30 43200 > th dose dependent rect. 7 1
113 734.81 atmosphere 1015 30 < th dose independent rect. 3 22
115 734.84 humidity 60 43200 < th dose dependent rect. 16 20
117 735.02 humidity 60 43200 < th dose dependent sin 10 NA
123 735.24 temperature 15 43200 < th dose dependent rect. 1 1
127 735.31 temperature 15 43200 < th dose dependent rect. 23 6
138 735.51 radiation 1 43200 < th dose independent rect. 10 1
139 735.51 radiation 1 43200 < th dose dependent rect. 10 1
142 735.54 radiation 30 43200 < th dose independent rect. 16 16
144 735.56 radiation 10 43200 < th dose independent rect. 17 9
145 735.56 temperature 15 43200 < th dose dependent rect. 3 1
146 735.58 radiation 10 43200 < th dose independent rect. 17 6
152 735.62 radiation 10 43200 < th dose independent rect. 17 4
156 735.64 radiation 10 43200 < th dose independent rect. 17 2
169 735.76 radiation 30 43200 < th dose independent rect. 5 3
174 735.84 radiation 30 43200 < th dose independent rect. 18 14
182 736.01 radiation 30 43200 < th dose independent rect. 20 12
188 736.06 radiation 1 43200 > th dose independent rect. 10 1
192 736.12 radiation 30 43200 < th dose independent rect. 1 7
200 736.22 humidity 90 43200 < th dose independent rect. 2 1
207 736.29 radiation 10 43200 < th dose independent rect. 17 14
210 736.32 radiation 10 43200 > th dose dependent rect. 17 13
234 736.54 radiation 10 43200 > th dose dependent rect. 17 1
267 736.75 humidity 70 43200 > th dose independent rect. 21 1
269 736.77 humidity 70 43200 < th dose independent rect. 20 13
274 736.86 humidity 60 43200 < th dose dependent rect. 10 1
285 737.04 radiation 30 43200 > th dose dependent rect. 15 2
313 737.12 humidity 50 43200 < th dose independent rect. 9 1
324 737.19 humidity 90 43200 > th dose independent rect. 2 1
331 737.35 temperature 20 30 > th dose independent rect. 1 2
333 737.37 radiation 40 43200 < th dose independent rect. 15 1
338 737.42 radiation 40 43200 < th dose independent rect. 15 11
340 737.43 wind 7 14400 > th dose independent rect. 9 1
343 737.47 radiation 40 43200 < th dose independent rect. 15 8
361 737.62 radiation 40 43200 < th dose independent rect. 15 4
362 737.63 humidity 90 43200 > th dose independent rect. 2 4
364 737.64 temperature 15 90 > th dose independent rect. 9 18
366 737.66 wind 7 14400 < th dose independent rect. 9 1
399 737.91 wind 1 43200 < th dose dependent rect. 7 1
409 738.02 humidity 50 90 > th dose dependent rect. 3 10
411 738.05 wind 9 14400 < th dose independent rect. 2 2
429 738.27 humidity 50 43200 > th dose independent rect. 9 1
435 738.31 humidity 70 43200 > th dose independent rect. 20 11
444 738.38 humidity 50 43200 > th dose independent rect. 16 20
479 738.64 humidity 70 43200 < th dose independent rect. 20 2
510 738.86 temperature 15 43200 < th dose dependent sin 9 NA
559 739.14 humidity 60 43200 > th dose independent sin 9 NA
600 739.41 wind 9 43200 > th dose dependent rect. 14 1
604 739.44 temperature 15 30 > th dose dependent rect. 1 2
606 739.49 humidity 90 43200 < th dose independent rect. 24 1
613 739.54 humidity 50 30 > th dose dependent rect. 3 22
629 739.71 temperature 15 270 > th dose independent rect. 22 16
642 739.80 temperature 15 43200 < th dose independent rect. 11 1
643 739.80 wind 7 14400 < th dose independent rect. 6 5
649 739.83 temperature 15 43200 > th dose independent rect. 11 1
650 739.83 humidity 90 270 < th dose independent rect. 21 19
654 739.88 humidity 90 43200 < th dose independent rect. 24 4
691 740.09 temperature 15 43200 > th dose independent rect. 2 1
703 740.16 temperature 15 14400 < th dose independent rect. 24 1
732 740.33 radiation 1 43200 > th dose independent rect. 4 1
742 740.33 radiation 1 43200 > th dose dependent rect. 4 1
756 740.37 wind 9 43200 > th dose independent rect. 14 1
790 740.51 wind 9 43200 < th dose independent rect. 14 1
812 740.67 temperature 15 14400 < th dose independent rect. 21 5
813 740.68 temperature 15 43200 < th dose independent rect. 2 1
830 740.78 temperature 20 43200 < th dose dependent rect. 14 1
833 740.81 temperature 15 14400 < th dose independent rect. 22 3
855 740.91 temperature 15 43200 > th dose independent rect. 24 1
866 740.97 temperature 15 43200 > th dose independent rect. 24 3
873 741.01 radiation 40 4320 < th dose dependent rect. 18 5
874 741.02 wind 7 14400 > th dose independent rect. 6 5
897 741.10 wind 1 43200 > th dose independent rect. 9 2
899 741.12 humidity 80 90 > th dose independent rect. 1 2
909 741.15 wind 9 43200 > th dose dependent rect. 11 4
927 741.26 temperature 15 14400 > th dose independent rect. 21 4
929 741.27 humidity 90 270 < th dose independent rect. 9 18
960 741.40 temperature 15 270 > th dose independent rect. 6 21