BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0106900 Os05g0106900|AK105734
(172 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0106900 Conserved hypothetical protein 355 7e-99
Os05g0106800 281 1e-76
Os09g0498700 Conserved hypothetical protein 150 6e-37
Os04g0483900 109 8e-25
Os02g0824800 102 1e-22
Os04g0484033 99 2e-21
Os02g0826000 Conserved hypothetical protein 97 5e-21
Os02g0825500 Cyclin-like F-box domain containing protein 97 5e-21
Os02g0786600 96 2e-20
Os02g0825100 Cyclin-like F-box domain containing protein 94 4e-20
Os02g0793500 Cyclin-like F-box domain containing protein 94 5e-20
Os01g0583800 90 7e-19
Os04g0484200 87 9e-18
Os07g0644700 82 2e-16
Os02g0825700 Conserved hypothetical protein 74 8e-14
>Os05g0106900 Conserved hypothetical protein
Length = 172
Score = 355 bits (912), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MVWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGG 60
MVWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGG
Sbjct: 1 MVWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGG 60
Query: 61 DGFEHNAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQRIHLH 120
DGFEHNAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQRIHLH
Sbjct: 61 DGFEHNAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQRIHLH 120
Query: 121 EKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIIIGCY 172
EKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIIIGCY
Sbjct: 121 EKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIIIGCY 172
>Os05g0106800
Length = 462
Score = 281 bits (720), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/170 (80%), Positives = 148/170 (87%)
Query: 1 MVWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGG 60
MVWI+PEEPKKLFPIFRNL++VYL +IS D GLDWTLFVLEGAP L+ FHVKIS HIC
Sbjct: 293 MVWILPEEPKKLFPIFRNLRNVYLCSISLDCGLDWTLFVLEGAPFLERFHVKISLHICDE 352
Query: 61 DGFEHNAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQRIHLH 120
+GF+ A SNVVWEASS+ IKHK LRLLDI GFET ENLIKYIRL IQRA+ LQRIHLH
Sbjct: 353 NGFKDRADRSNVVWEASSESIKHKTLRLLDINGFETTENLIKYIRLVIQRAVGLQRIHLH 412
Query: 121 EKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIIIG 170
+KEPCEDCD IYLNTPSLSRT FPNNE EKDLLR+QLLQGFSSSIEI IG
Sbjct: 413 DKEPCEDCDGIYLNTPSLSRTIFPNNEAEKDLLRQQLLQGFSSSIEITIG 462
>Os09g0498700 Conserved hypothetical protein
Length = 372
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 115/171 (67%), Gaps = 1/171 (0%)
Query: 1 MVWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGG 60
M+WI P+ PK L+P+F N++DVYL NI + L+WT+FVLE A L +F++K+ H C
Sbjct: 202 MIWIEPQGPKLLYPVFSNVRDVYLCNIFYECDLNWTVFVLEAAARLSNFYLKLCQHPCER 261
Query: 61 DGFEHNAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQRIHLH 120
+ E +A N++W+ S KH++L LL+I GF ++ +I Y RL ++RA+ L+RI L
Sbjct: 262 NRCEDSAEKVNLLWDQMSSDFKHRHLNLLEITGFAMDDKMINYTRLIMERAVNLKRIRLL 321
Query: 121 EKEPCEDCDDIY-LNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIIIG 170
++ PC+ + + + + S ++ RFP ++ EK L++++L+ GFSSS EI IG
Sbjct: 322 DQVPCDKGNAMNGMGSTSSNKWRFPVDQGEKSLIKQKLIDGFSSSAEITIG 372
>Os04g0483900
Length = 469
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 98/171 (57%), Gaps = 13/171 (7%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICG-- 59
+WI+PE P +L P+ NL V ++ I +SG+ WTLF+LE AP LK +K++ H C
Sbjct: 293 IWILPETPTRLAPLLNNLTFVGVHRIHPNSGITWTLFLLEAAPLLKMLSIKVTDHQCKPI 352
Query: 60 -GDGFEHN-AGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQRI 117
G+ + +N+ WE S KH +L +L GF+ + ++YIR I+RA+ L+ I
Sbjct: 353 EGELLKRTLCEKNNIYWEPSD--FKHYSLTMLIFYGFQPGKKCMEYIRQVIKRAVNLEDI 410
Query: 118 HLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEII 168
LH+ CE C Y TR+P ++E+DL+++ + +G +S IE I
Sbjct: 411 LLHDDR-CEVCKSYY------PVTRYPRTKKERDLVKKAINEGRTSPIERI 454
>Os02g0824800
Length = 494
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 14/170 (8%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICG-- 59
+W+ PE PK L P+ RNL+ + L + + + WT F LE APSLK V + H CG
Sbjct: 317 IWVQPECPKLLAPVLRNLQVLNLDELPEECDISWTCFFLEAAPSLKEMRVTVWDHWCGMQ 376
Query: 60 GDGFEHN----AGSSNVVWEASS-DIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIAL 114
D E + +NV WE+S+ D +H NL L I GF+ +N + YIR ++ A+ L
Sbjct: 377 TDKVEREEQGYSEKANVEWESSAPDGFRHYNLTKLTIYGFQPNDNFLGYIRHIMEAAVNL 436
Query: 115 QRIHLHEK---EPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGF 161
+ + L+++ E CED D PS +P +E++LLR+Q+ +G
Sbjct: 437 EDVSLYDRKLLECCEDLDPKIKVAPSW----YPQTIEEQELLRKQITEGL 482
>Os04g0484033
Length = 208
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 91/172 (52%), Gaps = 14/172 (8%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGGD 61
VWI E PK L P RNL V ++ I + G++WTLF+LE AP LK + + H+C
Sbjct: 31 VWIQLETPKHLAPFMRNLTLVDVHRIHPNCGINWTLFLLEAAPLLKILSISATDHLCVPV 90
Query: 62 GFEH-----NAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQR 116
E SN+ WE S KH NL L I GF+ + YIR ++ A+ L+
Sbjct: 91 EEELIKRFVICKKSNINWEPSD--FKHSNLSKLTIHGFQPNNIFMGYIRRVMKAAMNLEE 148
Query: 117 IHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEII 168
I LH+ + CEDC+ Y R+P + E+DL+++ + +G +S I+ I
Sbjct: 149 ILLHD-DWCEDCESYY------PVARYPQTKIERDLVKKAINEGITSPIKSI 193
>Os02g0826000 Conserved hypothetical protein
Length = 778
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICG-- 59
+W+ PE PK L P+ +NL+ + L + + WT F LE APSLK + + H C
Sbjct: 102 IWVQPECPKLLSPVLQNLQVLNLDELPEGRDIAWTCFFLEAAPSLKEVCITVWDHWCDME 161
Query: 60 GDGFEHN----AGSSNVVWEASS-DIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIAL 114
D E +NV WE+S+ D +H NL L I GF+ EN + YIR ++ A+ L
Sbjct: 162 TDSVEREEQGFCEKTNVEWESSTPDGFRHYNLTKLTIYGFQPNENFMGYIRHVMEAAVNL 221
Query: 115 QRIHLHEK---EPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGF 161
+ I L+++ E CED D PS +P QE++LL++Q+ +G
Sbjct: 222 EDISLYDRKVLECCEDLDPKIKVAPS----GYPETIQEQELLKKQITEGL 267
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHIC--G 59
+W+ PE PK L + RNL+ + L + + WT F +E AP LK + + H C
Sbjct: 542 IWVQPECPKLLAHVLRNLQVLNLDELPEGCDIAWTRFFIEAAPVLKELCITVWDHWCEME 601
Query: 60 GDGFEHNA----GSSNVVWEASS-DIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIAL 114
D E A ++V WE+S+ D +H NL L I GF+ +N + YIR ++ A+ L
Sbjct: 602 TDSVEREAQGFCDKTDVEWESSAPDGFRHYNLTKLTIYGFQPNDNFLGYIRHIMEAAVNL 661
Query: 115 QRIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQG 160
+ + L++++ E C+D+ ++ T +P QE++LL++Q+ +G
Sbjct: 662 EDVSLYDRKVLECCEDLDPKI-KVASTGYPEAIQEQELLKKQITEG 706
>Os02g0825500 Cyclin-like F-box domain containing protein
Length = 490
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 8/175 (4%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICG-- 59
+W+ PE PK L P+ +NL+ + L ++ + WT F LE AP LK + + H C
Sbjct: 313 IWVQPERPKLLVPVLQNLQVLNLEDLPEGCDITWTRFFLEAAPFLKELCITVWDHWCNIV 372
Query: 60 GDGFEHN----AGSSNVVWE-ASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIAL 114
D E +NV WE +SS+ +H NL L I GF+ ++N + YIR ++ A+ L
Sbjct: 373 TDQVEREEEGYCDKTNVQWESSSSNGFRHYNLVKLTIYGFQPDDNFLGYIRHIMETAVNL 432
Query: 115 QRIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIII 169
+ I L+ ++ EDC + ++ +R+P +E++LLR+Q+ +G ++ +I
Sbjct: 433 EEISLYNRK-VEDCCEELDPKIKIAPSRYPQTIEEQELLRKQITEGLVMALPHVI 486
>Os02g0786600
Length = 455
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGGD 61
+W PE PK L P+ RNL+ L I + L WT+FVLE AP LK + ++ H CG
Sbjct: 307 IWFQPESPKHLAPLLRNLRIACLDKIHKECDLIWTMFVLEAAPLLKELRISVTEHSCGSL 366
Query: 62 GFEH------NAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQ 115
+N+ W SD +H NL L+ ++GFE ++ +K I+ A+ L+
Sbjct: 367 AAADVMRKLLYCKKNNIEWHIDSD-FRHYNLLLVTVVGFEIKDKFVKLIKRLAHAAVNLE 425
Query: 116 RIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKD 151
IHL ++ CE+C Y T T +P+ ++E++
Sbjct: 426 DIHLEDEVKCENCQ--YYPT-----TWYPSTDKERE 454
>Os02g0825100 Cyclin-like F-box domain containing protein
Length = 946
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 8/167 (4%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHIC--G 59
+W+ PE P+ L P+ +NL+ + L + + + WT F LE APSLK + + H C
Sbjct: 321 IWVHPECPELLTPVLQNLQVLNLDELPEECDIAWTSFFLEAAPSLKEMCITVWDHWCEIE 380
Query: 60 GDGFEHN----AGSSNVVWEASS-DIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIAL 114
D E +N+ W +S+ D +H NL I GF+ EN + YIR ++ A+ L
Sbjct: 381 TDKVEREEQGYCDKTNLEWRSSARDGFRHYNLTKFTIYGFQPNENFLGYIRHIMEAAVNL 440
Query: 115 QRIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGF 161
+ I L++++ E C+D+ ++ +R+P N E++LLR+Q+ +G
Sbjct: 441 EDISLYDRKALECCEDLDPKI-KVAPSRYPQNIVEQELLRKQITEGL 486
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 36 TLFVLEGAPSLKSFHVKISHHICG--GDGFEHN----AGSSNVVWEASS-DIIKHKNLRL 88
T F LE AP LK + I H C D E +NV WE+SS D +H NL
Sbjct: 802 TRFFLEAAPFLKELCITIWDHWCNIVTDKVEREEEGYCDKTNVQWESSSPDGFRHCNLVK 861
Query: 89 LDIIGFETEENLIKYIRLAIQRAIALQRIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQ 148
L I GF+ ++N + YIR ++ A+ ++ I L++++ EDC + ++ +++P +
Sbjct: 862 LTIYGFQPDDNFLGYIRHIMETAVNIEEISLYDRK-VEDCCEELDPKIKVAPSKYPQTVE 920
Query: 149 EKDLLREQLLQGF 161
E++LLR+Q+ +G
Sbjct: 921 EQELLRKQITEGL 933
>Os02g0793500 Cyclin-like F-box domain containing protein
Length = 477
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGGD 61
+W+ PE P+KL +F L+ V L+ + L WT+F+LE AP LK + + H C +
Sbjct: 297 IWVQPELPQKLASVFYKLRLVNLFRVPEGCDLTWTMFILEAAPFLKELRMTVWDHWCNME 356
Query: 62 GFEHNAGS-----SNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQR 116
E S +V WE+S++ KH NL +L I F++E+ L+ +I+ ++ A+ L+
Sbjct: 357 KDEEMRASLYSSNKSVEWESSAEDFKHHNLSVLTIFCFQSEDFLVAFIKRIMEVAVNLED 416
Query: 117 IHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFS 162
+ L+ C+ C DI P +FP +++ L++++ +G S
Sbjct: 417 VFLYNMLSCDTCKDI--RRPC----KFPRTKRQMCSLKKRINEGNS 456
>Os01g0583800
Length = 500
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 94/174 (54%), Gaps = 9/174 (5%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGGD 61
+WI PE+ + F L + L I ++ L WTL++L+ APSL+ F + + H C
Sbjct: 329 IWIQPEDSNRFVAAFGRLTTLSLCRIFDECDLLWTLYLLKAAPSLRKFSIGVQKHSCQYG 388
Query: 62 GFEHNAGS------SNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQ 115
G E N+ W + +H +L L+I GFE + + + RL +++A L+
Sbjct: 389 GSEVKQRQILFPEKRNMFWIDFN--FQHYHLAQLEICGFEANDKYMIFTRLIMEQAKNLK 446
Query: 116 RIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIII 169
+ L +++ C++C D + S + + +P N++EK L+++QL +G SS + +++
Sbjct: 447 VVILSDEKTCDEC-DFQDDGTSSTGSSYPKNKEEKRLIQKQLTEGISSPVRVLV 499
>Os04g0484200
Length = 486
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGGD 61
+WI PE PK L P+ RNL+ L I + L W F+LE AP L++ H+K+ H C
Sbjct: 307 IWIQPEHPKLLAPVLRNLQIASLTCIHEECNLTWIFFLLEAAPLLETMHIKMWDHECKTS 366
Query: 62 GFE---HNAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAI 108
E G + WE+S D KH+NL +L I+GF+ +E + YIR A+
Sbjct: 367 EDEELYQKEGDKLLKWESSRD-FKHQNLNVLRIVGFQVDEKFMTYIRRAV 415
>Os07g0644700
Length = 456
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Query: 2 VWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHIC--- 58
+W+ PE+ K+L P F NLK + + I + L WT+ +LE APS++ + H+C
Sbjct: 280 LWMQPEQ-KQLCPAFNNLKKLSILCIHVEFDLLWTINLLEAAPSVELLCIDTWEHVCLVN 338
Query: 59 --GGDGFEHNAG-SSNVVWEASSDI-IKHKNLRLLDIIGFETEENLIKYIRLAIQRAIAL 114
DG + G +++ WE S ++ L+ L GF + + +++ +++A L
Sbjct: 339 KEDEDGRKLVHGETTHPSWEISEFTGTRNWQLKELQFTGFRPLKQQLVFLKAIMEQARNL 398
Query: 115 QRIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIIIGC 171
Q + L E+EPCEDC+ + + FP ++ E+D + EQL + SS +II C
Sbjct: 399 QTVILKEEEPCEDCEALGTPLSCIKDHDFPKSKDEQDNVVEQLREKISSDSQIIFQC 455
>Os02g0825700 Conserved hypothetical protein
Length = 144
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 36 TLFVLEGAPSLKSFHVKISHHICG--GDGFEHN----AGSSNVVWEASS-DIIKHKNLRL 88
T F LE APSLK + + H C D + +NV WE+S+ D +H NL
Sbjct: 1 TRFFLEAAPSLKEMCITVWDHWCEIETDKVKREKQGYCDKTNVEWESSAPDGFRHYNLTK 60
Query: 89 LDIIGFETEENLIKYIRLAIQRAIALQRIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQ 148
L I GF+ EN + YIR ++ A+ L+ I LH+++ + C+++ ++ +R+P +
Sbjct: 61 LTIYGFQPNENFMGYIRHVMEAAVNLENISLHDRKVLKCCEELDPKI-KVAPSRYPQTIE 119
Query: 149 EKDLLREQLLQGF 161
E++LLR+Q+ +G
Sbjct: 120 EQELLRKQITEGL 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,216,053
Number of extensions: 258832
Number of successful extensions: 597
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 17
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)