Os02g0825700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0825700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.13 | 0.616 | 7.06 | -0.452 | 0.959 | 1.27 | 1.54 | 2.24 | -0.00374 | 21.1 | 20.05 | 114 | -- | -- |
| 177.36 | 0.62 | 7.05 | -0.446 | 0.939 | 1.03 | 0.96 | -- | 0.00603 | 20.8 | 18.33 | 125 | -- | -- |
| 178.44 | 0.622 | 7.05 | -0.493 | 0.92 | 1.15 | -- | 1.32 | 0.0116 | 20.7 | 21.32 | 125 | -- | -- |
| 180.43 | 0.626 | 7.05 | -0.476 | 0.929 | 1.03 | -- | -- | 0.00835 | 20.7 | 18.74 | 125 | -- | -- |
| 207.49 | 0.671 | 7.03 | -0.268 | -- | 0.938 | -- | 1.37 | 0.0565 | -- | -0.002163 | 799 | -- | -- |
| 193.55 | 0.652 | 7.04 | -0.467 | 0.849 | -- | 0.958 | -- | 0.0544 | 19.3 | -- | -- | -- | -- |
| 195.92 | 0.655 | 7.03 | -0.486 | 0.855 | -- | -- | -- | 0.0572 | 19.1 | -- | -- | -- | -- |
| 206.66 | 0.67 | 7.03 | -0.55 | -- | 0.874 | -- | -- | -0.0439 | -- | -5.684 | 765 | -- | -- |
| 186.35 | 0.636 | 7.04 | -- | 0.928 | 1.05 | -- | -- | 0.0609 | 20.6 | 20.51 | 122 | -- | -- |
| 234.44 | 0.715 | 7.02 | -0.503 | -- | -- | -- | -- | 0.042 | -- | -- | -- | -- | -- |
| 202.16 | 0.665 | 7.02 | -- | 0.86 | -- | -- | -- | 0.111 | 19.1 | -- | -- | -- | -- |
| 214.62 | 0.682 | 7.02 | -- | -- | 0.852 | -- | -- | 0.0192 | -- | -0.5805 | 764 | -- | -- |
| 241.11 | 0.725 | 7 | -- | -- | -- | -- | -- | 0.0977 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 4 | 165.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 11 | 166.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 36 | 167.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 43 | 168.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 81 | 169.43 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 85 | 169.53 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 148 | 170.77 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 193 | 171.56 | radiation | 10 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 215 | 171.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 218 | 171.81 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 223 | 171.89 | radiation | 10 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 233 | 172.02 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 243 | 172.12 | radiation | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 290 | 172.32 | radiation | 30 | 270 | > th | dose dependent | sin | 10 | NA |
| 291 | 172.35 | radiation | 20 | 270 | > th | dose independent | rect. | 8 | 3 |
| 299 | 172.36 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 331 | 172.43 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 337 | 172.49 | radiation | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 339 | 172.50 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 341 | 172.51 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 369 | 172.70 | radiation | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 411 | 172.85 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 21 |
| 430 | 172.87 | radiation | 40 | 270 | < th | dose independent | sin | 10 | NA |
| 432 | 172.88 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 6 |
| 452 | 172.96 | radiation | 40 | 90 | < th | dose independent | sin | 6 | NA |
| 489 | 173.03 | radiation | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 513 | 173.07 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 559 | 173.10 | radiation | 20 | 90 | > th | dose dependent | no | NA | NA |
| 666 | 173.22 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 713 | 173.39 | radiation | 40 | 90 | < th | dose independent | sin | 3 | NA |
| 768 | 173.54 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 16 |
| 769 | 173.55 | radiation | 40 | 90 | > th | dose independent | sin | 4 | NA |
| 794 | 173.61 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 16 |
| 920 | 174.10 | temperature | 30 | 90 | < th | dose independent | sin | 4 | NA |