Os09g0498700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0498700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.56 | 0.341 | 7.65 | -0.231 | 0.293 | 0.65 | -0.536 | -0.794 | 0.378 | 7.93 | 21.2 | 1087 | -- | -- |
| 54.12 | 0.343 | 7.63 | -0.0344 | 0.305 | 0.72 | -0.427 | -- | 0.411 | 7.78 | 21.3 | 1084 | -- | -- |
| 53.38 | 0.34 | 7.65 | -0.231 | 0.291 | 0.658 | -- | -0.723 | 0.38 | 8.06 | 21.2 | 1103 | -- | -- |
| 54.57 | 0.344 | 7.62 | -0.0429 | 0.315 | 0.705 | -- | -- | 0.424 | 8.11 | 21.24 | 1002 | -- | -- |
| 57.63 | 0.354 | 7.65 | -0.215 | -- | 0.64 | -- | -0.738 | 0.39 | -- | 21.3 | 1205 | -- | -- |
| 69.34 | 0.39 | 7.58 | 0.243 | 0.264 | -- | -0.561 | -- | 0.614 | 6.65 | -- | -- | -- | -- |
| 70.11 | 0.392 | 7.58 | 0.235 | 0.262 | -- | -- | -- | 0.616 | 6.94 | -- | -- | -- | -- |
| 59.03 | 0.358 | 7.63 | -0.0536 | -- | 0.71 | -- | -- | 0.418 | -- | 21.22 | 1209 | -- | -- |
| 54.61 | 0.344 | 7.62 | -- | 0.312 | 0.686 | -- | -- | 0.429 | 8.1 | 21.3 | 1012 | -- | -- |
| 73.73 | 0.401 | 7.59 | 0.24 | -- | -- | -- | -- | 0.621 | -- | -- | -- | -- | -- |
| 71.56 | 0.396 | 7.59 | -- | 0.265 | -- | -- | -- | 0.589 | 6.88 | -- | -- | -- | -- |
| 59.09 | 0.358 | 7.63 | -- | -- | 0.689 | -- | -- | 0.427 | -- | 21.2 | 1209 | -- | -- |
| 75.25 | 0.405 | 7.59 | -- | -- | -- | -- | -- | 0.594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 4 | 52.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 46 | 53.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 53 | 53.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 58 | 53.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 72 | 53.98 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 80 | 54.03 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 171 | 54.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 193 | 54.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 218 | 54.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 234 | 54.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 247 | 54.75 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 21 |
| 294 | 54.89 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 319 | 54.93 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 608 | 55.55 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 633 | 55.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 638 | 55.61 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 643 | 55.62 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 19 |
| 650 | 55.63 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 678 | 55.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 679 | 55.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 3 |
| 684 | 55.70 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 686 | 55.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 695 | 55.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 697 | 55.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 720 | 55.73 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 22 |
| 754 | 55.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 784 | 55.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 843 | 55.82 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 879 | 55.84 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 906 | 55.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 943 | 55.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 981 | 55.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 983 | 55.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |