BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0607600 Os04g0607600|AK120889
(500 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0607600 Cation transporter family protein 759 0.0
Os02g0175000 Cation transporter family protein 283 2e-76
Os01g0307500 Cation transporter family protein 256 4e-68
Os06g0701700 HKT-type transporter (Sodium ion transporter) 243 3e-64
Os06g0701600 Cation transporter family protein 213 3e-55
Os04g0607500 Cation transporter family protein 211 9e-55
Os01g0532600 Similar to HKT1 (High-affinity potassium uptak... 208 7e-54
>Os04g0607600 Cation transporter family protein
Length = 500
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/500 (77%), Positives = 386/500 (77%)
Query: 1 MPTSRRALAGGALSMHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFFXXXXXXXXXX 60
MPTSRRALAGGALSMHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFF
Sbjct: 1 MPTSRRALAGGALSMHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFFTAVSAATVSS 60
Query: 61 XXXXEMEVFSNGQXXXXXXXXXXGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVAL 120
EMEVFSNGQ GGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVAL
Sbjct: 61 MSTVEMEVFSNGQLVVLTVLMLLGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVAL 120
Query: 121 ADIDGGDVENPTSSGEEAASRRRPMDADTLRHNAVRALFYIVLXXXXXXXXXXXXXXXXX 180
ADIDGGDVENPTSSGEEAASRRRPMDADTLRHNAVRALFYIVL
Sbjct: 121 ADIDGGDVENPTSSGEEAASRRRPMDADTLRHNAVRALFYIVLAIFAVVHVVGAVAVAAY 180
Query: 181 XXXSPGARRTLGDKSLNXXXXXXXXXXXXXXNCGFMPTNENMVVFKRDXXXXXXXXXXXX 240
SPGARRTLGDKSLN NCGFMPTNENMVVFKRD
Sbjct: 181 VLASPGARRTLGDKSLNTWTFAVFTTVSTFSNCGFMPTNENMVVFKRDAPLQLLLVPQVL 240
Query: 241 XGNTLFXXXXXXXXXXXXXXTRREELVEMXXXXXXXXXXXXXHLMPARRCWMXXXXXXXX 300
GNTLF TRREELVEM HLMPARRCWM
Sbjct: 241 AGNTLFAPLLAACVWAAAAATRREELVEMAREGGRAAAAGYAHLMPARRCWMLAATVAAF 300
Query: 301 XXXXXXXXCGMEWGGALQGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLM 360
CGMEWGGALQGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLM
Sbjct: 301 VAVLMALVCGMEWGGALQGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLM 360
Query: 361 MYLPPYTTWFPFEENSTTKDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKED 420
MYLPPYTTWFPFEENSTTKDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKED
Sbjct: 361 MYLPPYTTWFPFEENSTTKDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKED 420
Query: 421 PLNFSVLSIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDSGKLILIFV 480
PLNFSVLSIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDSGKLILIFV
Sbjct: 421 PLNFSVLSIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDSGKLILIFV 480
Query: 481 MFFGRLKKFSMKGGKAWKLS 500
MFFGRLKKFSMKGGKAWKLS
Sbjct: 481 MFFGRLKKFSMKGGKAWKLS 500
>Os02g0175000 Cation transporter family protein
Length = 531
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 177/494 (35%), Positives = 238/494 (48%), Gaps = 17/494 (3%)
Query: 13 LSMHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFFXXXXXXXXXXXXXXEMEVFSNG 72
L +HVAYF IS GYG L VLK R+ + +D F EME FS+
Sbjct: 47 LFVHVAYFALISFAGYGSLKVLKPRDKSNTLKDLDVLFTSVSASTVSSMATVEMEDFSSA 106
Query: 73 QXXXXXXXXXXGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDV-ALADIDGGDVENP 131
Q GGEVF S++G+ ++ + +R D+ ++ G P
Sbjct: 107 QLWVLTILMLIGGEVFTSMLGIHFMRAEFGTKESVSTRDHSPCIDIESITSTKFG----P 162
Query: 132 TSSGEEAA---SRRRPMDADTLRHNAVRALFYIVLXXXXXXXXXXXXXXXXXXXXSPGAR 188
++ G + S R + + ++ L ++V+ P A
Sbjct: 163 STQGTKVTVSFSELRMENGGHVEPKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAH 222
Query: 189 RTLGDKSLNXXXXXXXXXXXXXXNCGFMPTNENMVVFKRDXXXXXXXXXXXXXGNTLFXX 248
+ L K + NCGF P NENM++F+++ GNTLF
Sbjct: 223 KILKRKGIGIIVFSVFTAISSVGNCGFTPVNENMIIFQKNSILLLLILPQILAGNTLFAP 282
Query: 249 XXXXXXXXXXXXTRREELVEMXXXXXXXXXXXXXHLMPARRCWMXXXXXXXXXXXXXXXX 308
T +++ HLM R
Sbjct: 283 CLRLMVWSLEKITGKKDC---RYILEYPKAIGYKHLMSTRESVYLTLTVVSLIILQTVLF 339
Query: 309 CGMEWGG-ALQGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLMMYLPPYT 367
+EW AL GMS ++K+V+ALF +VNARH GES DLS L+ AILVL+ +MMYLP YT
Sbjct: 340 LSLEWSSVALDGMSNYQKIVSALFQSVNARHAGESVTDLSNLSSAILVLYTIMMYLPGYT 399
Query: 368 TWFPFEENSTTKDSNAENQGIR--LLESTLLSQLSYLTIFVIAICITERRKLKEDPLNFS 425
++ P + +DS E R LLE+ + S +SYL IFV+ ICITER + DPLNF+
Sbjct: 400 SFLPRHDG---EDSKTEKINKRKGLLENWIFSHMSYLAIFVMLICITERDSMATDPLNFN 456
Query: 426 VLSIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDSGKLILIFVMFFGR 485
V SI+ EVVSAYGNVGFS+GYSC R +N D C D GF G+WSD+GK ILI VM FGR
Sbjct: 457 VFSILFEVVSAYGNVGFSVGYSCKRLLNHDARCKDASYGFAGKWSDNGKAILIIVMLFGR 516
Query: 486 LKKFSMKGGKAWKL 499
LK F+MKGG+AWKL
Sbjct: 517 LKTFNMKGGRAWKL 530
>Os01g0307500 Cation transporter family protein
Length = 554
Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 176/524 (33%), Positives = 246/524 (46%), Gaps = 39/524 (7%)
Query: 15 MHVAYFLAISCLGYGLLGVLKVREPGAA-PRRIDRFFXXXXXXXXXXXXXXEMEVFSNGQ 73
+ + YFL IS LG+ +L L ++ P +D F EME FSN Q
Sbjct: 30 LQLLYFLFISLLGFLMLKALPMKTSMVPRPMDLDLIFTSVSATTVSSMVAVEMESFSNSQ 89
Query: 74 XXXXXXXXXXGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHG----------------- 116
GGEVF S++GL +K S + + HG
Sbjct: 90 LLLITLLMLLGGEVFTSILGLYFTNAKYSSKMIATLPDDDDHGGSGKPPPPTTSPSSTLV 149
Query: 117 DVALADIDGGDVENPTSSG------EEAASRRRP-----------MDADTLRHNAVRALF 159
++ LA V NPT++ E RR + + R L
Sbjct: 150 ELELAPPMDVVVVNPTTTATTHDEVELGLGRRNKRGCTCTTTHTSSSSSASKTTTTRLLM 209
Query: 160 YIVLXXXXXXXXXXXXXXXXXXXXSPGARRTLGDKSLNXXXXXXXXXXXXXXNCGFMPTN 219
++V+ GA + K ++ NCGF+PTN
Sbjct: 210 FVVMGYHAVVHVAGYTAIVVYLSAVGGAGAVVAGKGISAHTFAIFTVVSTFANCGFVPTN 269
Query: 220 ENMVVFKRDXXXXXXXXXXXXXGNTLFXXXXXXXXXXXXXXTRREELVEMXXXXXXXXXX 279
E MV F+ GNTLF T EL E+
Sbjct: 270 EGMVSFRSFPGLLLLVMPHVLLGNTLFPVFLRLAIAALERVTGWPELGELLIRRRRGGGE 329
Query: 280 XXXHLMPARRCWMXXXXXXXXXXXXXXXXCGMEWGG-ALQGMSPWEKVVNALFLAVNARH 338
HL+P+ R C MEWG L+G++ +K+V ALF+AVN+RH
Sbjct: 330 GYHHLLPSSRTRFLALTVAVLVVAQLALFCAMEWGSDGLRGLTAGQKLVGALFMAVNSRH 389
Query: 339 TGESTVDLSILAPAILVLFVLMMYLPPYTTWFPFEENSTTKDSNAENQGIR---LLESTL 395
+GE +DLS ++ A++VL+V+MMYLPPYTT+ P ++ + + +G + + L
Sbjct: 390 SGEMVLDLSTVSSAVVVLYVVMMYLPPYTTFVPVQDKHQQTGAQSGQEGSSSSSIWQKLL 449
Query: 396 LSQLSYLTIFVIAICITERRKLKEDPLNFSVLSIVVEVVSAYGNVGFSMGYSCSRQINPD 455
+S LS L IF++ ICITERR++ +DP+N+SVL+IVVEV+SAYGNVGFS GYSC+RQ+ PD
Sbjct: 450 MSPLSCLAIFIVVICITERRQIADDPINYSVLNIVVEVISAYGNVGFSTGYSCARQVRPD 509
Query: 456 HLCTDKWTGFVGRWSDSGKLILIFVMFFGRLKKFSMKGGKAWKL 499
C D W GF G+WS GKL L+ VMF+GRLKKFS+ GG+AWK+
Sbjct: 510 GSCRDLWVGFSGKWSKQGKLTLMAVMFYGRLKKFSLHGGQAWKI 553
>Os06g0701700 HKT-type transporter (Sodium ion transporter)
Length = 530
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/498 (31%), Positives = 235/498 (47%), Gaps = 24/498 (4%)
Query: 15 MHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFFXXXXXXXXXXXXXXEMEVFSNGQX 74
+ ++YFL IS LG LL LK P P ID F EMEV S+ Q
Sbjct: 43 IQLSYFLLISILGSVLLMFLKPSNPEFRPGYIDMLFLSTSALTLSSLITIEMEVLSSSQI 102
Query: 75 XXXXXXXXXGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVALA---DIDGGDVENP 131
GGEVFVS +GL + ++ E GD + ++D + +
Sbjct: 103 VVITLLMLLGGEVFVSFLGLMLR--------LNHKHNPEFSGDKVSSVPIELDTINSAST 154
Query: 132 TSSGEE----AASRRRPMDA--DTLRHNAVR-ALFYIVLXXXXXXXXXXXXXXXXXXXXS 184
S EE AA P D R +R L ++V
Sbjct: 155 VISCEELQLEAAIPEVPSSTIKDLKRSKRLRWFLGFVVFSYFVVIHVAGFLLVLWYISRV 214
Query: 185 PGARRTLGDKSLNXXXXXXXXXXXXXXNCGFMPTNENMVVFKRDXXXXXXXXXXXXXGNT 244
A+ L K +N N G +PTNENM +F ++ GNT
Sbjct: 215 SSAKAPLKKKGINIALFSFSVTVSSFANVGLVPTNENMAIFSKNPGLLLLFIGQILAGNT 274
Query: 245 LFXXXXXXXXXXXXXXTRREELVEMXXXXXXXXXXXXXHLMPARRCWMXXXXXXXXXXXX 304
L+ T+ EL M +L+P
Sbjct: 275 LYPLFLRLLIWFLGKVTKLRELKLMIKNPEELQYD---YLLPKLPTAFLASTVIGLMASL 331
Query: 305 XXXXCGMEWGGAL-QGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLMMYL 363
++W ++ G+S ++K++NALF+AVNARH+GE+++D S++APA+LVLF+++MYL
Sbjct: 332 VTLFGAVDWNSSVFDGLSSYQKIINALFMAVNARHSGENSIDCSLIAPAVLVLFIILMYL 391
Query: 364 PPYTTWFPFEENSTTKDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKEDPLN 423
PP TT+ + T + A+ + ++++ SQL+ +++FVI ITER +L+ DPLN
Sbjct: 392 PPSTTFALSNGDEKTANKKAKRKLGLVVQNLAFSQLACISVFVIVAFITERSRLRNDPLN 451
Query: 424 FSVLSIVVEVVSAYGNVGFSMGYSCSR--QINPDHLCTDKWTGFVGRWSDSGKLILIFVM 481
FS L+++ E++SAYGNVG S GYSCSR +++P +C DK G WSD GKL+L+FVM
Sbjct: 452 FSALNMIFEIISAYGNVGLSTGYSCSRLQKLHPGSICQDKPYSLSGWWSDEGKLLLVFVM 511
Query: 482 FFGRLKKFSMKGGKAWKL 499
+GRLK F+ G+ W+L
Sbjct: 512 LYGRLKAFTKGTGEYWRL 529
>Os06g0701600 Cation transporter family protein
Length = 509
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 215/482 (44%), Gaps = 20/482 (4%)
Query: 13 LSMHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFFXXXXXXXXXXXXXXEMEVFSNG 72
L +H++YFL I LG+ L VL+ PR ID FF +ME S+
Sbjct: 33 LLIHLSYFLIIDVLGFVALVVLRPSNHKYNPRYIDMFFLSTSAVTVTGLATTQMEDLSSS 92
Query: 73 QXXXXXXXXXXGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVALADIDGGDVENPT 132
Q G E+F+S +GL + SK ++ +RRV S V + +
Sbjct: 93 QIAVLTLLMFLGSEMFLSFLGLVLESSK-QNKHDPENRRVSS---VTVCE---------Q 139
Query: 133 SSGEEAASRRRPMDADTLRHNAVRALFYIVLXXXXXXXXXXXXXXXXXXXXSPGARRTLG 192
S EEA + M++ ++ + + L ++VL AR L
Sbjct: 140 SHLEEAIPQTPSMNSTDIKRSCHKYLVFVVLAYMIIILVTGSLLVFMYIAHVSSARDVLT 199
Query: 193 DKSLNXXXXXXXXXXXXXXNCGFMPTNENMVVFKRDXXXXXXXXXXXXXGNTLFXXXXXX 252
KS+N N G +PTNE+M VF + G+TL
Sbjct: 200 RKSINKALFSISVTVSSFTNGGLLPTNESMAVFSSNNGLLLLLIGQILAGSTLLPMFLRL 259
Query: 253 XXXXXXXXTRREELVEMXXXXXXXXXXXXXHLMPARRCWMXXXXXXXXXXXXXXXXCGME 312
R + E HL+P + C +
Sbjct: 260 VIWALRGL-RLAKAEEPDFMMNNSSSVGFSHLLPNLQTIFLAAVEVAFVGMTVILFCCLN 318
Query: 313 WGGAL-QGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLMMYLPPYTTWFP 371
W A+ G++ +K+ NALF+AV+AR GE+++D S++APA LVLF++MMY P T F
Sbjct: 319 WDSAVFAGLTSLQKITNALFMAVSARQAGENSIDCSLVAPAALVLFMVMMYTPSLTKLFS 378
Query: 372 FEENSTT---KDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKEDPLNFSVLS 428
++ + + ++G L++ S L++ T ++ +CITERR + DPLNFS +
Sbjct: 379 ACQDHKQIGPESDDRTSKGKPFLKTMAFSPLAFNTTVIMLVCITERRSISTDPLNFSTFN 438
Query: 429 IVVEVVSAYGNVGFSMGYSCSRQINPDH--LCTDKWTGFVGRWSDSGKLILIFVMFFGRL 486
I+ EV+SAYGN+G S GYSCSRQ+ C +K F G WS+ GKLIL+ M +GRL
Sbjct: 439 IIFEVISAYGNIGLSTGYSCSRQLQHQDGIACHEKPYSFSGWWSEPGKLILVLAMLYGRL 498
Query: 487 KK 488
Sbjct: 499 NS 500
>Os04g0607500 Cation transporter family protein
Length = 552
Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 211/485 (43%), Gaps = 10/485 (2%)
Query: 13 LSMHVAYFLAISCLGYGLLGVLKVR-EPGAAPRRIDRFFXXXXXXXXXXXXXXEMEVFSN 71
L + + YF+ IS G+ L LK + +PG P+ +D F EME S+
Sbjct: 73 LVVQLVYFVIISFAGFLALKNLKPQGKPG--PKDLDLLFTSVSTLTVSSMATVEMEDLSD 130
Query: 72 GQXXXXXXXXXXGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVAL-ADIDGGDVE- 129
Q GGEVF S++GL + + + D+ + + GD +
Sbjct: 131 RQLWVLILLMLMGGEVFTSMLGLYFNNANANRNENSQRSLPSISLDIEFNSPANNGDHKI 190
Query: 130 NPTSSGEEAASRRRPMDADTLRHNAVRALFYIVLXXXXXXXXXXXXXXXXXXXXSPGARR 189
EE S+ + ++ +N L IV AR
Sbjct: 191 TECGQSEETMSQNQVQQNKSITYNPCAVLVRIVTGYFVATVISSSVIIIIYFWIDSDARN 250
Query: 190 TLGDKSLNXXXXXXXXXXXXXXNCGFMPTNENMVVFKRDXXXXXXXXXXXXXGNTLFXXX 249
L K +N NCGF P N NM F+++ GNTLF
Sbjct: 251 VLKSKEINMYTFCIFTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQILAGNTLFSPL 310
Query: 250 XXXXXXXXXXXTRREELVEMXXXXXXXXXXXXXHLMPARRCWMXXXXXXXXXXXXXXXXC 309
+ + E + HL R C
Sbjct: 311 LRLCVWVLGKVSGKAEYAYILQHPGETGYK---HLHVRRNSVYIVLSVTGLILLQVMFIC 367
Query: 310 GMEWGG-ALQGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLMMYLPPYTT 368
EW +L+GM+ +K+V LF +VN R GES +D+S L+P+ L+LF ++MYLP +
Sbjct: 368 SFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGESILDISTLSPSTLLLFAVVMYLPSDAS 427
Query: 369 WFPFE-ENSTTKDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKEDPLNFSVL 427
+ +N D + L + +++LS L +F CITER+ + DPLNF++
Sbjct: 428 FLTANADNQPLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKSISSDPLNFNIF 487
Query: 428 SIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDSGKLILIFVMFFGRLK 487
SIV E++SA+GNVG+S+GYSC + + PD C D GFVGRW++ GKLI+I VMF GRLK
Sbjct: 488 SIVFEIISAFGNVGYSLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILVMFLGRLK 547
Query: 488 KFSMK 492
+F +K
Sbjct: 548 EFILK 552
>Os01g0532600 Similar to HKT1 (High-affinity potassium uptake transporter)
Length = 509
Score = 208 bits (530), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 210/481 (43%), Gaps = 20/481 (4%)
Query: 13 LSMHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFFXXXXXXXXXXXXXXEMEVFSNG 72
L +H++YFL I LG+ L VL+ PR +D FF +ME S+
Sbjct: 33 LLIHLSYFLIIDILGFVSLVVLRPSNHKYNPRYVDMFFLSTSAVTVIGLATIQMEDLSSS 92
Query: 73 QXXXXXXXXXXGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVALADIDGGDVENPT 132
Q ++F+S +GL + SK ++ +RRV S V +
Sbjct: 93 QIAILTLLMFLDSKMFLSFLGLVLESSK-QNKHDPENRRVSS---VTVCK---------Q 139
Query: 133 SSGEEAASRRRPMDADTLRHNAVRALFYIVLXXXXXXXXXXXXXXXXXXXXSPGARRTLG 192
S EEA + M++ ++ ++ L ++VL AR L
Sbjct: 140 SQLEEATPQTPSMNSIDIKKRCLKYLVFVVLAYMIIILVTGSLLVFMYIAHVSSARDVLT 199
Query: 193 DKSLNXXXXXXXXXXXXXXNCGFMPTNENMVVFKRDXXXXXXXXXXXXXGNTLFXXXXXX 252
KS+N N G +PTNE+MVVF + G+TLF
Sbjct: 200 RKSINKALFSISVTVSSFTNGGLLPTNESMVVFSSNNGLLLLLIGQILAGSTLFPVFLRL 259
Query: 253 XXXXXXXXTRREELVEMXXXXXXXXXXXXXHLMPARRCWMXXXXXXXXXXXXXXXXCGME 312
R + E HL+P + C +
Sbjct: 260 VIWALRGL-RLAKAEEPDFMMNNSSAVGFSHLLPNLQTIFLAVVEVAFVAMTVILFCCLN 318
Query: 313 WGGAL-QGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLMMYLPPYTTWFP 371
W + G+S +K+ NALF+AVNAR GE+++D S++APA LVLF++MMY P T F
Sbjct: 319 WDSVVFAGLSSLQKITNALFMAVNARQAGENSIDCSLVAPAALVLFMVMMYTPSLTKLFS 378
Query: 372 FEENST---TKDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKEDPLNFSVLS 428
++ + + ++G L+ S L + T ++ +CITERR L DPLN S +
Sbjct: 379 ACQDHKRIGPESDDRTSKGKPFLKMMAFSPLGFNTTVIMLVCITERRSLSTDPLNLSTFN 438
Query: 429 IVVEVVSAYGNVGFSMGYSCSRQINPDH--LCTDKWTGFVGRWSDSGKLILIFVMFFGRL 486
I+ EV+SAYGN+G S GYSCSRQ+ C +K F G WS+ GKLIL+ M GRL
Sbjct: 439 IIFEVISAYGNIGLSTGYSCSRQLQHQEGIACHEKAYNFSGWWSEPGKLILVLAMLCGRL 498
Query: 487 K 487
Sbjct: 499 N 499
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,042,976
Number of extensions: 433356
Number of successful extensions: 969
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 951
Number of HSP's successfully gapped: 7
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)