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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0607600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cation transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.65 (0.0426) R2 : 0.358
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.09 (0.105) R2dC : 0.152 R2C : 0.0926
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.08 (0.0895) R2dN8 : 0.265 R2N8 : 0.206
σ : 0.802
deviance : 294.23
__
_____
C
peak time of C : 9.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.32 0.771 3.85 -2.03 1.13 1.24 -0.557 -6.5 0.721 9.52 25.52 4179 -- --
277.48 0.776 3.71 -0.931 1.1 0.901 -0.499 -- 0.744 9.4 7.223 11003 -- --
269.86 0.765 3.84 -2 1.14 1.3 -- -6.72 0.787 9.46 26.3 4186 -- --
278.14 0.777 3.71 -0.846 1.09 0.863 -- -- 0.788 9.53 10.67 8575 -- --
343.04 0.863 3.87 -2.09 -- 1.25 -- -7.05 0.788 -- 26.67 4390 -- --
289.51 0.798 3.66 -0.36 1.08 -- -0.509 -- 1.04 9.38 -- -- -- --
290.46 0.798 3.66 -0.378 1.09 -- -- -- 1.04 9.37 -- -- -- --
348.11 0.869 3.74 -0.824 -- 0.818 -- -- 0.805 -- 10.98 8720 -- --
288.38 0.791 3.64 -- 1.08 0.391 -- -- 1.09 9.49 26.6 4159 -- --
359.39 0.886 3.69 -0.384 -- -- -- -- 1.04 -- -- -- -- --
294.23 0.802 3.65 -- 1.09 -- -- -- 1.08 9.4 -- -- -- --
357.09 0.883 3.69 -- -- 0.636 -- -- 1.01 -- 13.13 7243 -- --
363.28 0.89 3.68 -- -- -- -- -- 1.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.90 humidity 80 43200 < th dose dependent rect. 21 2
2 259.92 humidity 80 43200 < th dose independent rect. 21 1
3 259.92 wind 3 43200 < th dose dependent rect. 8 4
4 260.04 humidity 80 43200 > th dose independent rect. 21 2
7 260.13 atmosphere 1005 43200 > th dose independent rect. 6 1
8 260.20 radiation 1 4320 < th dose dependent rect. 3 2
9 260.21 temperature 25 4320 > th dose dependent rect. 6 2
14 260.32 atmosphere 1005 43200 < th dose independent rect. 6 1
15 260.32 wind 1 14400 > th dose dependent rect. 11 1
16 260.33 humidity 80 43200 < th dose independent rect. 20 9
17 260.35 humidity 80 43200 < th dose dependent rect. 20 5
21 260.41 wind 9 14400 < th dose dependent rect. 11 1
26 260.49 wind 1 43200 > th dose dependent rect. 9 8
34 260.59 wind 5 43200 < th dose independent rect. 11 6
35 260.59 humidity 80 43200 > th dose independent rect. 20 9
38 260.60 wind 9 43200 < th dose dependent rect. 8 9
54 260.75 wind 5 43200 > th dose independent rect. 11 6
56 260.77 wind 3 43200 > th dose dependent rect. 9 12
60 260.79 wind 3 43200 < th dose dependent rect. 9 1
68 260.82 wind 5 43200 < th dose independent rect. 9 11
80 260.89 wind 1 43200 < th dose dependent rect. 24 2
81 260.91 humidity 80 43200 > th dose independent rect. 24 1
92 260.98 wind 3 43200 > th dose independent rect. 20 1
103 261.05 wind 5 43200 > th dose independent rect. 10 10
110 261.06 wind 3 43200 > th dose dependent sin 21 NA
116 261.09 wind 5 43200 < th dose dependent rect. 11 2
117 261.09 wind 9 43200 < th dose dependent rect. 11 4
122 261.11 humidity 80 43200 < th dose dependent rect. 20 13
127 261.12 wind 9 43200 < th dose dependent rect. 8 13
153 261.22 wind 1 43200 > th dose dependent rect. 6 15
165 261.25 wind 9 43200 < th dose dependent sin 23 NA
170 261.27 humidity 80 43200 > th dose independent rect. 3 1
179 261.28 wind 9 43200 < th dose dependent rect. 6 15
187 261.31 wind 5 43200 < th dose dependent rect. 20 1
204 261.36 wind 5 43200 < th dose independent sin 20 NA
219 261.41 humidity 80 43200 < th dose independent rect. 3 1
242 261.46 wind 3 43200 > th dose dependent rect. 11 14
244 261.46 wind 3 43200 > th dose dependent rect. 11 16
285 261.58 wind 5 43200 < th dose independent rect. 11 14
292 261.59 atmosphere 995 43200 < th dose dependent rect. 14 4
308 261.63 wind 5 43200 > th dose independent rect. 15 1
325 261.66 wind 1 43200 > th dose dependent rect. 8 17
331 261.68 wind 3 43200 > th dose independent rect. 9 5
336 261.69 atmosphere 995 43200 > th dose independent rect. 14 1
342 261.70 humidity 80 43200 > th dose independent rect. 24 4
345 261.71 humidity 80 43200 < th dose independent rect. 24 1
349 261.71 wind 9 43200 < th dose dependent rect. 8 17
351 261.72 wind 5 43200 < th dose independent rect. 15 1
385 261.78 wind 5 43200 > th dose independent sin 20 NA
400 261.80 wind 1 43200 > th dose dependent rect. 9 19
404 261.82 wind 9 43200 < th dose dependent rect. 9 19
407 261.83 humidity 80 43200 < th dose independent rect. 23 5
454 261.90 atmosphere 995 43200 < th dose independent rect. 14 2
485 261.94 atmosphere 995 43200 < th dose independent rect. 13 4
486 261.94 atmosphere 995 43200 < th dose independent rect. 16 7
492 261.94 wind 1 43200 > th dose dependent rect. 6 19
507 261.97 atmosphere 995 43200 < th dose dependent rect. 17 5
514 261.98 atmosphere 1005 43200 < th dose independent rect. 2 1
519 261.98 wind 9 43200 < th dose dependent rect. 6 19
521 261.99 wind 3 43200 < th dose independent rect. 20 1
523 261.99 wind 5 43200 > th dose independent rect. 11 14
527 262.00 atmosphere 1005 43200 > th dose independent rect. 1 2
534 262.01 atmosphere 995 43200 < th dose independent rect. 12 6
535 262.01 atmosphere 995 43200 > th dose independent rect. 16 7
550 262.03 wind 1 43200 > th dose dependent rect. 19 2
567 262.05 wind 7 14400 < th dose independent rect. 6 8
591 262.08 wind 3 43200 < th dose independent rect. 9 1
614 262.10 atmosphere 995 43200 > th dose independent rect. 17 5
637 262.12 atmosphere 995 43200 > th dose independent rect. 11 7
639 262.12 atmosphere 1010 43200 < th dose dependent rect. 7 1
662 262.14 temperature 25 4320 > th dose independent rect. 5 4
676 262.15 radiation 1 4320 < th dose independent rect. 18 13
683 262.16 atmosphere 995 43200 > th dose independent rect. 11 10
687 262.17 temperature 25 4320 > th dose independent rect. 6 2
714 262.19 wind 5 14400 > th dose independent rect. 11 1
747 262.22 wind 1 43200 > th dose dependent rect. 24 21
748 262.23 radiation 40 43200 > th dose independent rect. 10 2
825 262.31 wind 9 43200 < th dose dependent rect. 24 21
868 262.36 wind 7 14400 > th dose independent rect. 5 9
895 262.38 wind 7 14400 < th dose independent rect. 9 4
962 262.45 temperature 25 4320 < th dose independent rect. 5 3