BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0607600 Os04g0607600|AK120889
         (500 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10310.1  | chr4:6392008-6395667 FORWARD LENGTH=507            271   8e-73

>AT4G10310.1 | chr4:6392008-6395667 FORWARD LENGTH=507
          Length = 506

 Score =  271 bits (692), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 166/474 (35%), Positives = 229/474 (48%), Gaps = 22/474 (4%)

Query: 35  KVREP--GAAPRRIDRFFXXXXXXXXXXXXXXEMEVFSNGQXXXXXXXXXXGGEVFVSLV 92
           K+ +P   + P   D FF              +MEVFSN Q          GGE+F S +
Sbjct: 41  KITKPRTTSRPHDFDLFFTSVSAITVSSMSTVDMEVFSNTQLIFLTILMFLGGEIFTSFL 100

Query: 93  GLASKWSKLRSDAMDRSRRVESHGDVALADIDGGDVENPTSSGEEAASRRRPMDADTLRH 152
            L   +        ++ R +    +   +  D  DVE  T   E             +  
Sbjct: 101 NLYVSYFTKFVFPHNKIRHILGSYNSDSSIEDRCDVETVTDYREGLIK---------IDE 151

Query: 153 NAVRALFYIVLXXXXXXXXXXXXXXXXXXXXSPGARRTLGDKSLNXXXXXXXXXXXXXXN 212
            A + L+ +VL                       AR  L  K ++              N
Sbjct: 152 RASKCLYSVVLSYHLVTNLVGSVLLLVYVNFVKTARDVLSSKEISPLTFSVFTTVSTFAN 211

Query: 213 CGFMPTNENMVVFKRDXXXXXXXXXXXXXGNTLFXXXXXXXXXXXXXXTRREELVEMXXX 272
           CGF+PTNENM++F+++             GNTLF              T+R+E       
Sbjct: 212 CGFVPTNENMIIFRKNSGLIWLLIPQVLMGNTLFPCFLVLLIWGLYKITKRDE---YGYI 268

Query: 273 XXXXXXXXXXHLMPARRCWMXXXXXXXXXXXXXXXXCGMEWGG-ALQGMSPWEKVVNALF 331
                     HL+  R C +                C  EW   +L+GMS +EK+V +LF
Sbjct: 269 LKNHNKMGYSHLLSVRLCVLLGVTVLGFLIIQLLFFCAFEWTSESLEGMSSYEKLVGSLF 328

Query: 332 LAVNARHTGESTVDLSILAPAILVLFVLMMYLPPYTTWFPFEENSTTK----DSNAENQG 387
             VN+RHTGE+ VDLS L+PAILVLF+LMMYLPPYT + P  E  T +    D ++EN G
Sbjct: 329 QVVNSRHTGETIVDLSTLSPAILVLFILMMYLPPYTLFMPLTEQKTIEKEGGDDDSEN-G 387

Query: 388 IRLLESTLL-SQLSYLTIFVIAICITERRKLKEDPLNFSVLSIVVEVVSAYGNVGFSMGY 446
            ++ +S L+ SQLS+LTI +  I ITER+ L+ DP+NF+VL+I +EV+SAYGNVGF+ GY
Sbjct: 388 KKVKKSGLIVSQLSFLTICIFLISITERQNLQRDPINFNVLNITLEVISAYGNVGFTTGY 447

Query: 447 SCSRQIN-PDHLCTDKWTGFVGRWSDSGKLILIFVMFFGRLKKFSMKGGKAWKL 499
           SC R+++  D  C D   GF GRWS  GK +LI VMF+GR K+F+ K G+AW L
Sbjct: 448 SCERRVDISDGGCKDASYGFAGRWSPMGKFVLIIVMFYGRFKQFTAKSGRAWIL 501



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,101,179
Number of extensions: 267000
Number of successful extensions: 572
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 397
Effective length of database: 8,282,721
Effective search space: 3288240237
Effective search space used: 3288240237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)