FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0701700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HKT-type transporter (Sodium ion transporter).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0435) R2 : 0.715
β1 : -0.864 (0.159) R2dD : 0.0187 R2D : 0.00749
β2 : 4.61 (0.145) R2dC : 1.12 R2C : -0.0437
β3 : -3.18 (0.122) R2dE : 0.723 R2E : -0.42
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.516 (0.0931) R2dN8 : 0.0271 R2N8 : -0.00206
σ : 0.815
deviance : 302.06
__
_____
C
peak time of C : 4.13
E
wheather : radiation
threshold : 4.911
memory length : 13
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.71
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
291.76 0.803 4.56 -0.859 4.73 -3.3 0.794 -2.09 -0.536 4.04 5.22 15 4.01 --
299.21 0.812 4.56 -0.886 4.63 -3.28 -1.13 -- -0.527 4 4.68 17 3.88 --
290.05 0.799 4.55 -0.869 4.59 -3.16 -- -1.61 -0.514 4.14 4.911 13 3.76 --
302.06 0.815 4.55 -0.864 4.61 -3.18 -- -- -0.516 4.13 4.911 13 3.71 --
666.43 1.21 4.57 -0.873 -- -2.68 -- -0.382 -0.39 -- 22.94 79 12.5 --
416.97 0.957 4.48 -0.835 3.46 -- 0.923 -- -0.387 7.16 -- -- -- --
419.17 0.959 4.48 -0.818 3.47 -- -- -- -0.39 7.13 -- -- -- --
408.85 0.942 4.61 -0.971 -- -4.02 -- -- -0.492 -- 174.5 596 16.1 --
321.69 0.84 4.53 -- 4.57 -3.15 -- -- -0.418 4.16 4.91 16 3.71 --
1054.02 1.52 4.56 -0.752 -- -- -- -- -0.328 -- -- -- -- --
436.8 0.978 4.46 -- 3.46 -- -- -- -0.299 7.14 -- -- -- --
428.96 0.965 4.57 -- -- -3.9 -- -- -0.386 -- 212.5 596 16 --
1068.94 1.53 4.54 -- -- -- -- -- -0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 303.99 precipitation 0.1 270 < th dose independent rect. 2 7
2 303.99 precipitation 0.1 270 < th dose dependent rect. 2 7
3 305.60 radiation 1.0 30 < th dose independent sin 10 NA
5 306.79 temperature 10.0 270 > th dose dependent rect. 21 5
6 308.87 radiation 10.0 10 < th dose dependent sin 10 NA
12 311.27 precipitation 0.1 270 < th dose independent rect. 2 19
13 311.27 precipitation 0.1 270 < th dose dependent rect. 2 19
15 311.87 wind 7.0 270 < th dose independent rect. 2 7
16 311.88 precipitation 0.1 270 < th dose independent rect. 3 4
17 311.88 precipitation 0.1 270 < th dose dependent rect. 3 4
19 312.04 temperature 10.0 270 > th dose independent rect. 2 7
21 312.04 humidity 50.0 270 > th dose independent rect. 2 7
22 312.04 atmosphere 995.0 270 > th dose independent rect. 2 7
23 312.04 atmosphere 1015.0 270 < th dose independent rect. 2 7
24 312.04 temperature 10.0 270 > th dose independent rect. 9 17
25 312.16 temperature 30.0 270 < th dose independent rect. 2 7
29 313.13 radiation 1.0 30 > th dose independent sin 9 NA
35 314.31 wind 9.0 270 < th dose independent rect. 9 17
43 315.36 precipitation 0.1 270 < th dose independent rect. 1 22
44 315.36 precipitation 0.1 270 < th dose dependent rect. 1 22
45 315.46 wind 9.0 270 < th dose independent rect. 2 19
46 315.48 wind 7.0 270 < th dose independent rect. 23 2
48 315.64 temperature 15.0 270 > th dose independent rect. 23 2
49 315.68 precipitation 0.1 270 < th dose independent rect. 9 17
50 315.68 precipitation 0.1 270 < th dose dependent rect. 9 17
51 315.72 radiation 40.0 270 < th dose independent rect. 2 7
52 315.72 temperature 15.0 270 > th dose independent rect. 2 19
53 315.81 wind 9.0 270 < th dose independent rect. 1 22
58 315.92 temperature 30.0 270 < th dose independent rect. 23 2
59 315.92 humidity 50.0 270 > th dose independent rect. 23 2
62 315.92 atmosphere 995.0 270 > th dose independent rect. 23 2
63 315.92 radiation 1.0 270 < th dose independent rect. 23 2
68 315.92 temperature 10.0 270 > th dose independent rect. 1 22
69 315.92 radiation 1.0 270 < th dose dependent rect. 23 2
74 315.96 precipitation 0.1 270 < th dose independent rect. 23 2
75 315.96 precipitation 0.1 270 < th dose dependent rect. 23 2
77 316.07 radiation 1.0 270 < th dose dependent rect. 21 5
78 316.08 temperature 10.0 270 > th dose independent rect. 21 5
79 316.08 temperature 30.0 270 < th dose independent rect. 21 5
80 316.08 humidity 50.0 270 > th dose independent rect. 21 5
83 316.08 atmosphere 995.0 270 > th dose independent rect. 21 5
84 316.08 radiation 1.0 270 < th dose independent rect. 21 5
96 316.12 precipitation 0.1 270 < th dose independent rect. 21 5
97 316.12 precipitation 0.1 270 < th dose dependent rect. 21 5
98 316.21 wind 9.0 270 < th dose independent rect. 21 5
139 317.69 wind 7.0 270 < th dose independent rect. 3 4
141 317.86 atmosphere 1015.0 270 < th dose independent rect. 23 2
145 318.13 radiation 20.0 270 < th dose independent rect. 3 4
148 318.27 temperature 10.0 270 > th dose independent rect. 3 4
150 318.27 temperature 30.0 270 < th dose independent rect. 3 4
151 318.27 humidity 50.0 270 > th dose independent rect. 3 4
153 318.27 atmosphere 995.0 270 > th dose independent rect. 3 4
154 318.27 atmosphere 1015.0 270 < th dose independent rect. 3 4
155 318.27 radiation 40.0 270 < th dose independent rect. 3 4
156 318.27 temperature 10.0 270 > th dose independent rect. 7 20
185 319.39 humidity 50.0 270 > th dose dependent rect. 23 2
186 319.47 atmosphere 1015.0 270 < th dose independent rect. 2 19
189 319.78 precipitation 0.1 270 < th dose independent rect. 7 20
190 319.78 precipitation 0.1 270 < th dose dependent rect. 7 20
194 319.93 atmosphere 1015.0 270 < th dose independent rect. 22 4
198 320.47 wind 9.0 270 < th dose dependent rect. 23 2
200 320.53 wind 9.0 270 < th dose dependent rect. 3 4
203 320.88 radiation 40.0 270 < th dose dependent rect. 3 4
234 321.64 wind 1.0 270 > th dose independent rect. 9 17
240 321.93 wind 9.0 270 < th dose independent rect. 7 20
253 322.00 temperature 10.0 10 > th dose dependent rect. 23 6
258 322.11 wind 9.0 270 < th dose independent rect. 13 9
297 322.49 humidity 50.0 270 > th dose dependent rect. 21 5
306 323.03 radiation 1.0 30 < th dose independent rect. 23 15
328 323.47 temperature 10.0 270 > th dose independent rect. 13 9
329 323.47 temperature 10.0 270 > th dose independent rect. 22 15
330 323.47 atmosphere 995.0 270 > th dose independent rect. 22 15
364 323.95 radiation 1.0 30 < th dose independent rect. 23 13
369 324.04 temperature 10.0 270 > th dose dependent rect. 3 4
376 324.29 wind 1.0 270 > th dose independent rect. 21 5
377 324.33 radiation 1.0 30 < th dose independent rect. 23 9
383 324.36 wind 9.0 270 < th dose dependent rect. 2 7
389 324.50 humidity 50.0 270 > th dose dependent rect. 3 4
396 324.74 wind 9.0 270 < th dose independent rect. 22 15
399 324.80 wind 9.0 270 < th dose dependent rect. 21 5
439 326.01 atmosphere 995.0 270 > th dose independent rect. 2 19
441 326.06 radiation 1.0 30 > th dose independent rect. 5 4
452 326.08 atmosphere 995.0 270 > th dose dependent rect. 3 4
463 326.37 humidity 50.0 270 > th dose independent rect. 22 15
469 326.54 precipitation 0.1 270 < th dose independent rect. 16 15
470 326.54 precipitation 0.1 270 < th dose dependent rect. 16 15
476 326.90 radiation 1.0 30 < th dose dependent rect. 23 15
484 327.09 atmosphere 995.0 270 > th dose independent rect. 7 20
485 327.10 atmosphere 995.0 90 > th dose independent rect. 9 19
498 327.54 wind 9.0 270 < th dose independent rect. 16 15
507 327.76 atmosphere 995.0 270 > th dose independent rect. 9 17
510 327.83 radiation 1.0 30 < th dose dependent rect. 23 13
514 327.92 atmosphere 1015.0 270 < th dose independent rect. 22 15
546 328.18 radiation 20.0 270 < th dose independent rect. 16 15
550 328.22 radiation 1.0 30 < th dose dependent rect. 23 9
576 328.67 atmosphere 1015.0 270 < th dose independent rect. 9 17
594 329.00 precipitation 0.1 270 < th dose independent rect. 13 9
595 329.00 precipitation 0.1 270 < th dose dependent rect. 13 9
619 329.37 temperature 10.0 270 > th dose independent rect. 7 9
620 329.37 atmosphere 1015.0 270 < th dose independent rect. 7 9
621 329.37 temperature 10.0 270 > th dose independent rect. 16 15
624 329.38 atmosphere 1015.0 270 < th dose independent rect. 7 19
650 329.52 wind 1.0 90 > th dose independent rect. 23 6
652 329.61 radiation 1.0 30 < th dose independent rect. 23 7
655 329.70 precipitation 0.1 270 < th dose independent rect. 7 9
656 329.70 precipitation 0.1 270 < th dose dependent rect. 7 9
658 329.72 atmosphere 995.0 270 > th dose independent rect. 7 8
665 329.85 wind 7.0 10 < th dose dependent rect. 5 4
702 330.14 atmosphere 1000.0 10 > th dose dependent rect. 5 4
719 330.38 atmosphere 1015.0 90 < th dose independent rect. 9 19
722 330.43 wind 1.0 270 > th dose independent rect. 13 9
733 330.84 wind 9.0 270 < th dose independent rect. 7 8
770 331.15 radiation 1.0 30 < th dose dependent rect. 23 7
775 331.30 wind 9.0 10 < th dose independent rect. 5 18
795 331.61 radiation 40.0 270 < th dose dependent rect. 15 16
798 331.65 humidity 50.0 270 > th dose dependent rect. 2 7
809 332.01 temperature 15.0 10 > th dose independent rect. 23 6
814 332.05 atmosphere 995.0 270 > th dose independent rect. 16 15
908 332.83 radiation 1.0 270 > th dose independent rect. 4 2
920 332.85 wind 9.0 10 < th dose independent rect. 23 6
922 332.85 temperature 30.0 10 < th dose independent rect. 23 6
923 332.85 humidity 50.0 10 > th dose independent rect. 23 6
926 332.85 atmosphere 995.0 10 > th dose independent rect. 23 6
932 332.85 temperature 10.0 10 > th dose independent rect. 5 18
934 332.85 atmosphere 1015.0 10 < th dose independent rect. 5 18
935 332.87 wind 1.0 270 > th dose independent rect. 2 5
936 332.87 precipitation 0.1 10 < th dose independent rect. 5 18
938 332.87 precipitation 0.1 10 < th dose dependent rect. 5 18
939 332.93 atmosphere 1005.0 10 > th dose independent rect. 5 4
961 333.21 humidity 50.0 270 > th dose independent rect. 7 8
968 333.33 precipitation 0.1 10 < th dose independent rect. 5 4
971 333.33 precipitation 0.1 10 < th dose dependent rect. 5 4