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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0307500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cation transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.8 (0.0365) R2 : 0.811
β1 : 2.22 (0.133) R2dD : 0.124 R2D : 0.103
β2 : 2.13 (0.125) R2dC : 0.22 R2C : 0.453
β3 : 1.72 (0.125) R2dE : 0.153 R2E : 0.427
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.737 (0.0794) R2dN8 : 0.0531 R2N8 : 0.0475
σ : 0.669
deviance : 206.57
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_____
C
peak time of C : 7.29
E
wheather : temperature
threshold : 17
memory length : 721
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.8
open length of G : 2.21

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.05 0.648 4.81 1.95 2.34 1.59 2.96 -1.43 0.695 7.63 18.89 717 2.9 2.17
190.67 0.643 4.79 2.19 2.19 1.65 2.54 -- 0.754 7.4 17.1 717 2.98 2.05
204.8 0.667 4.77 2.41 2.09 1.72 -- 1.15 0.822 7.2 16.6 728 3.15 1.73
206.57 0.669 4.8 2.22 2.13 1.72 -- -- 0.737 7.29 17 721 2.8 2.21
270.55 0.766 4.81 2.28 -- 2.88 -- 1.5 0.91 -- 11.09 654 2.5 1.3
251.36 0.743 4.69 2.47 3.27 -- 2.99 -- 1.06 7.98 -- -- -- --
277.65 0.78 4.69 2.55 3.27 -- -- -- 1.06 7.92 -- -- -- --
239.97 0.721 4.81 2.48 -- 3.74 -- -- 0.668 -- 12.77 677 0.135 5.28
334.17 0.851 4.83 -- 1.9 2.2 -- -- 0.611 6.66 16.6 709 2.9 2.52
860.87 1.37 4.77 2.59 -- -- -- -- 1.1 -- -- -- -- --
449.06 0.991 4.76 -- 3.29 -- -- -- 0.777 7.87 -- -- -- --
338.91 0.857 4.93 -- -- 3.75 -- -- 0.385 -- 13.86 690 0.00657 5.53
1037.15 1.5 4.84 -- -- -- -- -- 0.817 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.78 temperature 20 720 > th dose dependent rect. 3 2
2 192.96 temperature 15 720 > th dose dependent rect. 23 7
4 193.74 temperature 20 720 > th dose independent rect. 4 1
9 194.52 temperature 25 720 < th dose dependent rect. 1 2
10 194.53 temperature 25 720 < th dose dependent rect. 24 5
20 195.57 temperature 25 720 < th dose dependent rect. 23 8
108 201.55 temperature 25 720 < th dose dependent sin 9 NA
150 203.52 temperature 20 720 < th dose independent rect. 1 6
156 203.91 temperature 20 720 < th dose independent rect. 3 2
159 204.02 temperature 20 720 < th dose independent rect. 1 4
183 204.73 temperature 20 720 > th dose independent rect. 23 7
267 206.68 temperature 15 720 > th dose dependent sin 10 NA
276 206.92 temperature 20 720 > th dose independent rect. 2 13
318 207.86 temperature 20 720 < th dose independent sin 7 NA
382 208.92 temperature 20 720 > th dose independent rect. 23 15
390 209.09 temperature 20 720 > th dose independent sin 7 NA
431 209.76 temperature 20 720 > th dose independent rect. 19 12
476 210.54 temperature 20 720 > th dose independent rect. 21 17
534 211.18 temperature 20 720 > th dose independent rect. 19 19
686 213.11 temperature 20 720 > th dose independent rect. 2 18
859 214.88 temperature 25 720 < th dose dependent no NA NA
861 214.91 temperature 20 720 > th dose independent rect. 12 19
945 215.86 temperature 20 720 > th dose independent rect. 23 21
967 216.07 temperature 20 720 > th dose independent rect. 23 23
971 216.10 temperature 20 720 > th dose independent rect. 12 21
979 216.18 temperature 20 720 > th dose independent rect. 10 21