BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0307500 Os01g0307500|AK108663
         (554 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10310.1  | chr4:6392008-6395667 FORWARD LENGTH=507            248   5e-66

>AT4G10310.1 | chr4:6392008-6395667 FORWARD LENGTH=507
          Length = 506

 Score =  248 bits (634), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/348 (40%), Positives = 183/348 (52%), Gaps = 5/348 (1%)

Query: 206 RLLMFVVMGYHAVVHVAGYTAIVVYLSXXXXXXXXXXXKGISAHTFAIFTVVSTFANCGF 265
           + L  VV+ YH V ++ G   ++VY++           K IS  TF++FT VSTFANCGF
Sbjct: 155 KCLYSVVLSYHLVTNLVGSVLLLVYVNFVKTARDVLSSKEISPLTFSVFTTVSTFANCGF 214

Query: 266 VPTNEGMVSFRSFXXXXXXXXXXXXXXNTLFPVFLRLAIAALERVTGWPXXXXXXXXXXX 325
           VPTNE M+ FR                NTLFP FL L I  L ++T              
Sbjct: 215 VPTNENMIIFRKNSGLIWLLIPQVLMGNTLFPCFLVLLIWGLYKIT---KRDEYGYILKN 271

Query: 326 XXXXXYHHLLPSSRTRFXXXXXXXXXXXXXXXFCAMEWGSDGLRGLTAGQKLVGALFMAV 385
                Y HLL                      FCA EW S+ L G+++ +KLVG+LF  V
Sbjct: 272 HNKMGYSHLLSVRLCVLLGVTVLGFLIIQLLFFCAFEWTSESLEGMSSYEKLVGSLFQVV 331

Query: 386 NSRHSGEMXXXXXXXXXXXXXXXXXMMYLPPYTTFVPVQDKHXXXXXXXXXXXXXXXXIW 445
           NSRH+GE                  MMYLPPYT F+P+ ++                 + 
Sbjct: 332 NSRHTGETIVDLSTLSPAILVLFILMMYLPPYTLFMPLTEQKTIEKEGGDDDSENGKKVK 391

Query: 446 QK-LLMSPLSCLAIFIVVICITERRQIADDPINYSVLNIVVEVISAYGNVGFSTGYSCAR 504
           +  L++S LS L I I +I ITER+ +  DPIN++VLNI +EVISAYGNVGF+TGYSC R
Sbjct: 392 KSGLIVSQLSFLTICIFLISITERQNLQRDPINFNVLNITLEVISAYGNVGFTTGYSCER 451

Query: 505 QVR-PDGSCRDLWVGFSGKWSKQGKLTLMAVMFYGRLKKFSLHGGQAW 551
           +V   DG C+D   GF+G+WS  GK  L+ VMFYGR K+F+   G+AW
Sbjct: 452 RVDISDGGCKDASYGFAGRWSPMGKFVLIIVMFYGRFKQFTAKSGRAW 499



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,095,244
Number of extensions: 228818
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 450
Effective length of database: 8,255,305
Effective search space: 3714887250
Effective search space used: 3714887250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 114 (48.5 bits)