Os04g0607500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cation transporter family protein.
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Os04g0607500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cation transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 342.64 | 0.87 | 8.64 | -2.21 | 4.75 | -1.08 | 1.56 | 2.67 | -0.443 | 8.63 | 74 | 1416 | -- | -- |
| 358.82 | 0.882 | 8.6 | -1.78 | 4.77 | -1.04 | 1.52 | -- | -0.336 | 8.7 | 74.28 | 1373 | -- | -- |
| 350.53 | 0.872 | 8.64 | -2.15 | 4.75 | -1.06 | -- | 2.64 | -0.444 | 8.64 | 74 | 1404 | -- | -- |
| 366.42 | 0.892 | 8.6 | -1.73 | 4.77 | -1.03 | -- | -- | -0.334 | 8.7 | 74.48 | 1375 | -- | -- |
| 1615.83 | 1.87 | 8.78 | -2.2 | -- | -1.27 | -- | 2.92 | -0.439 | -- | 74 | 1452 | -- | -- |
| 393.6 | 0.93 | 8.56 | -1.62 | 4.77 | -- | 1.44 | -- | -0.196 | 8.63 | -- | -- | -- | -- |
| 400.41 | 0.937 | 8.56 | -1.57 | 4.77 | -- | -- | -- | -0.196 | 8.63 | -- | -- | -- | -- |
| 1636.25 | 1.89 | 8.69 | -1.61 | -- | -0.676 | -- | -- | -0.16 | -- | 74 | 1464 | -- | -- |
| 400.64 | 0.932 | 8.53 | -- | 4.77 | -1.44 | -- | -- | 0.0272 | 8.59 | 64.83 | 34768 | -- | -- |
| 1682.55 | 1.92 | 8.69 | -1.56 | -- | -- | -- | -- | -0.154 | -- | -- | -- | -- | -- |
| 465.7 | 1.01 | 8.52 | -- | 4.76 | -- | -- | -- | -0.0204 | 8.66 | -- | -- | -- | -- |
| 1674.01 | 1.91 | 8.65 | -- | -- | -1.6 | -- | -- | 0.0613 | -- | 64 | 34607 | -- | -- |
| 1746.79 | 1.95 | 8.65 | -- | -- | -- | -- | -- | 0.019 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 336.74 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 11 | 337.54 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 23 | 338.55 | humidity | 80 | 1440 | < th | dose dependent | sin | 14 | NA |
| 28 | 338.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 46 | 340.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 47 | 340.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 54 | 340.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 58 | 340.45 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 62 | 340.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 63 | 340.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 70 | 340.61 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 90 | 341.07 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 115 | 341.39 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 187 | 343.06 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 11 |
| 191 | 343.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 200 | 343.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 248 | 343.59 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 265 | 343.73 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 268 | 343.78 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 303 | 344.08 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 356 | 344.35 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 415 | 345.12 | humidity | 70 | 1440 | > th | dose independent | sin | 14 | NA |
| 436 | 345.39 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 448 | 345.53 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 473 | 345.74 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
| 567 | 346.72 | humidity | 70 | 1440 | < th | dose independent | sin | 14 | NA |
| 695 | 347.77 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 738 | 348.07 | radiation | 10 | 1440 | > th | dose independent | sin | 15 | NA |
| 811 | 348.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 874 | 348.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 904 | 349.09 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 943 | 349.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 951 | 349.43 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 967 | 349.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 15 |