BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0607500 Os04g0607500|AJ491816
         (552 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10310.1  | chr4:6392008-6395667 FORWARD LENGTH=507            324   9e-89

>AT4G10310.1 | chr4:6392008-6395667 FORWARD LENGTH=507
          Length = 506

 Score =  324 bits (830), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 187/479 (39%), Positives = 259/479 (54%), Gaps = 43/479 (8%)

Query: 92  KNLKPQGKPGPKDXXXXXXXXXXXXXXXXXXXEMEDLSDRQLWVLILLMLMGGEVFTSML 151
           K  KP+    P D                   +ME  S+ QL  L +LM +GGE+FTS L
Sbjct: 41  KITKPRTTSRPHDFDLFFTSVSAITVSSMSTVDMEVFSNTQLIFLTILMFLGGEIFTSFL 100

Query: 152 GLYFXXXXXXXXXXSQRSLPSISLDIEFNSPANNGDHKITECGQSEETMSQNQVQQNKS- 210
            LY                  +S   +F  P N   H +           +  V+     
Sbjct: 101 NLY------------------VSYFTKFVFPHNKIRHILGSYNSDSSIEDRCDVETVTDY 142

Query: 211 ------ITYNPCAVLVRIVTGYFVATXXXXXXXXXXYFWIDSDARNVLKSKEINMYTFCI 264
                 I       L  +V  Y + T          Y      AR+VL SKEI+  TF +
Sbjct: 143 REGLIKIDERASKCLYSVVLSYHLVTNLVGSVLLLVYVNFVKTARDVLSSKEISPLTFSV 202

Query: 265 FTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQILAGNTLFSPLLRLCVWVLGKVSGK 324
           FT VS+FANCGF P N NM  FRKN  L+ L+IPQ+L GNTLF   L L +W L K++ +
Sbjct: 203 FTTVSTFANCGFVPTNENMIIFRKNSGLIWLLIPQVLMGNTLFPCFLVLLIWGLYKITKR 262

Query: 325 AEYAYILQHPGETGYKHLHVRRNSVYIVLSVTGLILLQVMFICSFEWNSESLEGMNWLQK 384
            EY YIL++  + GY HL   R  V + ++V G +++Q++F C+FEW SESLEGM+  +K
Sbjct: 263 DEYGYILKNHNKMGYSHLLSVRLCVLLGVTVLGFLIIQLLFFCAFEWTSESLEGMSSYEK 322

Query: 385 LVGLLFQSVNTRQAGESILDISTLSPSTLLLFAVVMYLPSDASFLTANADNQPLTDKKT- 443
           LVG LFQ VN+R  GE+I+D+STLSP+ L+LF ++MYLP    F+       PLT++KT 
Sbjct: 323 LVGSLFQVVNSRHTGETIVDLSTLSPAILVLFILMMYLPPYTLFM-------PLTEQKTI 375

Query: 444 ---------NSISRALWRNFTVNKLSCLAMFTFLACITERKSISSDPLNFNIFSIVFEII 494
                     +  +       V++LS L +  FL  ITER+++  DP+NFN+ +I  E+I
Sbjct: 376 EKEGGDDDSENGKKVKKSGLIVSQLSFLTICIFLISITERQNLQRDPINFNVLNITLEVI 435

Query: 495 SAFGNVGYSLGYSCQKLLK-PDATCKDASYGFVGRWTEEGKLIVILVMFLGRLKEFILK 552
           SA+GNVG++ GYSC++ +   D  CKDASYGF GRW+  GK ++I+VMF GR K+F  K
Sbjct: 436 SAYGNVGFTTGYSCERRVDISDGGCKDASYGFAGRWSPMGKFVLIIVMFYGRFKQFTAK 494



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,991,018
Number of extensions: 417192
Number of successful extensions: 957
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,255,305
Effective search space: 3698376640
Effective search space used: 3698376640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)