BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0607500 Os04g0607500|AJ491816
(552 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0607500 Cation transporter family protein 1041 0.0
Os02g0175000 Cation transporter family protein 404 e-112
Os06g0701700 HKT-type transporter (Sodium ion transporter) 290 2e-78
Os01g0307500 Cation transporter family protein 280 3e-75
Os06g0701600 Cation transporter family protein 261 1e-69
Os01g0532600 Similar to HKT1 (High-affinity potassium uptak... 252 5e-67
Os04g0607600 Cation transporter family protein 242 6e-64
>Os04g0607500 Cation transporter family protein
Length = 552
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/552 (92%), Positives = 513/552 (92%)
Query: 1 MHPPSLVLDTLKRIKLYIAMKLLLPNSEVPRIYWEKAQHLCGFLSMKLISRARCVASSVK 60
MHPPSLVLDTLKRIKLYIAMKLLLPNSEVPRIYWEKAQHLCGFLSMKLISRARCVASSVK
Sbjct: 1 MHPPSLVLDTLKRIKLYIAMKLLLPNSEVPRIYWEKAQHLCGFLSMKLISRARCVASSVK 60
Query: 61 QSYSFLVCKSNPLVVQLVYFVIISFAGFLALKNLKPQGKPGPKDXXXXXXXXXXXXXXXX 120
QSYSFLVCKSNPLVVQLVYFVIISFAGFLALKNLKPQGKPGPKD
Sbjct: 61 QSYSFLVCKSNPLVVQLVYFVIISFAGFLALKNLKPQGKPGPKDLDLLFTSVSTLTVSSM 120
Query: 121 XXXEMEDLSDRQLWVLILLMLMGGEVFTSMLGLYFXXXXXXXXXXSQRSLPSISLDIEFN 180
EMEDLSDRQLWVLILLMLMGGEVFTSMLGLYF SQRSLPSISLDIEFN
Sbjct: 121 ATVEMEDLSDRQLWVLILLMLMGGEVFTSMLGLYFNNANANRNENSQRSLPSISLDIEFN 180
Query: 181 SPANNGDHKITECGQSEETMSQNQVQQNKSITYNPCAVLVRIVTGYFVATXXXXXXXXXX 240
SPANNGDHKITECGQSEETMSQNQVQQNKSITYNPCAVLVRIVTGYFVAT
Sbjct: 181 SPANNGDHKITECGQSEETMSQNQVQQNKSITYNPCAVLVRIVTGYFVATVISSSVIIII 240
Query: 241 YFWIDSDARNVLKSKEINMYTFCIFTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQI 300
YFWIDSDARNVLKSKEINMYTFCIFTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQI
Sbjct: 241 YFWIDSDARNVLKSKEINMYTFCIFTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQI 300
Query: 301 LAGNTLFSPLLRLCVWVLGKVSGKAEYAYILQHPGETGYKHLHVRRNSVYIVLSVTGLIL 360
LAGNTLFSPLLRLCVWVLGKVSGKAEYAYILQHPGETGYKHLHVRRNSVYIVLSVTGLIL
Sbjct: 301 LAGNTLFSPLLRLCVWVLGKVSGKAEYAYILQHPGETGYKHLHVRRNSVYIVLSVTGLIL 360
Query: 361 LQVMFICSFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGESILDISTLSPSTLLLFAVVM 420
LQVMFICSFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGESILDISTLSPSTLLLFAVVM
Sbjct: 361 LQVMFICSFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGESILDISTLSPSTLLLFAVVM 420
Query: 421 YLPSDASFLTANADNQPLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKSISSD 480
YLPSDASFLTANADNQPLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKSISSD
Sbjct: 421 YLPSDASFLTANADNQPLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKSISSD 480
Query: 481 PLNFNIFSIVFEIISAFGNVGYSLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILV 540
PLNFNIFSIVFEIISAFGNVGYSLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILV
Sbjct: 481 PLNFNIFSIVFEIISAFGNVGYSLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILV 540
Query: 541 MFLGRLKEFILK 552
MFLGRLKEFILK
Sbjct: 541 MFLGRLKEFILK 552
>Os02g0175000 Cation transporter family protein
Length = 531
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/521 (44%), Positives = 318/521 (61%), Gaps = 10/521 (1%)
Query: 35 EKAQHLCGFLSMKLISRARCVASSVKQSYSFLVCKSNPLVVQLVYFVIISFAGFLALKNL 94
+K Q F + K S + S+K S+ F + ++NPL V + YF +ISFAG+ +LK L
Sbjct: 10 KKLQTFRTFAASKFSSFTKSAQKSIKYSFQF-IYQNNPLFVHVAYFALISFAGYGSLKVL 68
Query: 95 KPQGKPGP-KDXXXXXXXXXXXXXXXXXXXEMEDLSDRQLWVLILLMLMGGEVFTSMLGL 153
KP+ K KD EMED S QLWVL +LML+GGEVFTSMLG+
Sbjct: 69 KPRDKSNTLKDLDVLFTSVSASTVSSMATVEMEDFSSAQLWVLTILMLIGGEVFTSMLGI 128
Query: 154 YFXXXXXXXXXXSQRSLPSISLDIEFNSPANNGDHKITECGQSEETMSQNQVQQNKSITY 213
+F S +DIE + G T+ + + S+ +++ +
Sbjct: 129 HFMRAEFGTKESVSTRDHSPCIDIESITSTKFGPS--TQGTKVTVSFSELRMENGGHVEP 186
Query: 214 NPCAVLVRIVTGYFVATXXXXXXXXXXYFWIDSDARNVLKSKEINMYTFCIFTAVSSFAN 273
L +V GY + T Y + A +LK K I + F +FTA+SS N
Sbjct: 187 KTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAHKILKRKGIGIIVFSVFTAISSVGN 246
Query: 274 CGFTPLNSNMQPFRKNWVLLLLVIPQILAGNTLFSPLLRLCVWVLGKVSGKAEYAYILQH 333
CGFTP+N NM F+KN +LLLL++PQILAGNTLF+P LRL VW L K++GK + YIL++
Sbjct: 247 CGFTPVNENMIIFQKNSILLLLILPQILAGNTLFAPCLRLMVWSLEKITGKKDCRYILEY 306
Query: 334 PGETGYKHLHVRRNSVYIVLSVTGLILLQVMFICSFEWNSESLEGMNWLQKLVGLLFQSV 393
P GYKHL R SVY+ L+V LI+LQ + S EW+S +L+GM+ QK+V LFQSV
Sbjct: 307 PKAIGYKHLMSTRESVYLTLTVVSLIILQTVLFLSLEWSSVALDGMSNYQKIVSALFQSV 366
Query: 394 NTRQAGESILDISTLSPSTLLLFAVVMYLPSDASFLTANADNQPLTDKKTNSIS--RALW 451
N R AGES+ D+S LS + L+L+ ++MYLP SFL + D + D KT I+ + L
Sbjct: 367 NARHAGESVTDLSNLSSAILVLYTIMMYLPGYTSFLPRH-DGE---DSKTEKINKRKGLL 422
Query: 452 RNFTVNKLSCLAMFTFLACITERKSISSDPLNFNIFSIVFEIISAFGNVGYSLGYSCQKL 511
N+ + +S LA+F L CITER S+++DPLNFN+FSI+FE++SA+GNVG+S+GYSC++L
Sbjct: 423 ENWIFSHMSYLAIFVMLICITERDSMATDPLNFNVFSILFEVVSAYGNVGFSVGYSCKRL 482
Query: 512 LKPDATCKDASYGFVGRWTEEGKLIVILVMFLGRLKEFILK 552
L DA CKDASYGF G+W++ GK I+I+VM GRLK F +K
Sbjct: 483 LNHDARCKDASYGFAGKWSDNGKAILIIVMLFGRLKTFNMK 523
>Os06g0701700 HKT-type transporter (Sodium ion transporter)
Length = 530
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/510 (35%), Positives = 264/510 (51%), Gaps = 22/510 (4%)
Query: 52 ARCVASSVKQSYSFLVCKSNPLVVQLVYFVIISFAGFLALKNLKPQG---KPGPKDXXXX 108
R + V ++ F+ +P +QL YF++IS G + L LKP +PG D
Sbjct: 20 GRYFVNFVVLAHRFIALHIHPFWIQLSYFLLISILGSVLLMFLKPSNPEFRPGYIDMLFL 79
Query: 109 XXXXXXXXXXXXXXXEMEDLSDRQLWVLILLMLMGGEVFTSMLGLYFXXXXXXXXXXSQR 168
EME LS Q+ V+ LLML+GGEVF S LGL S
Sbjct: 80 STSALTLSSLITI--EMEVLSSSQIVVITLLMLLGGEVFVSFLGLMLRLNHKHNPEFSGD 137
Query: 169 SLPSISLDIEFNSPANNGDHKITECGQSEETMSQNQVQQNKSITYNPCAVLVR------- 221
+ S+ ++++ N + C EE + + + S T R
Sbjct: 138 KVSSVPIELD----TINSASTVISC---EELQLEAAIPEVPSSTIKDLKRSKRLRWFLGF 190
Query: 222 IVTGYFVATXXXXXXXXXXYFWIDSDARNVLKSKEINMYTFCIFTAVSSFANCGFTPLNS 281
+V YFV Y S A+ LK K IN+ F VSSFAN G P N
Sbjct: 191 VVFSYFVVIHVAGFLLVLWYISRVSSAKAPLKKKGINIALFSFSVTVSSFANVGLVPTNE 250
Query: 282 NMQPFRKNWVLLLLVIPQILAGNTLFSPLLRLCVWVLGKVSGKAEYAYILQHPGETGYKH 341
NM F KN LLLL I QILAGNTL+ LRL +W LGKV+ E ++++P E Y +
Sbjct: 251 NMAIFSKNPGLLLLFIGQILAGNTLYPLFLRLLIWFLGKVTKLRELKLMIKNPEELQYDY 310
Query: 342 LHVRRNSVYIVLSVTGLILLQVMFICSFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGES 401
L + + ++ +V GL+ V + +WNS +G++ QK++ LF +VN R +GE+
Sbjct: 311 LLPKLPTAFLASTVIGLMASLVTLFGAVDWNSSVFDGLSSYQKIINALFMAVNARHSGEN 370
Query: 402 ILDISTLSPSTLLLFAVVMYLPSDASFLTANADNQPLTDKKTNSISRALWRNFTVNKLSC 461
+D S ++P+ L+LF ++MYLP +F +N D + K + + +N ++L+C
Sbjct: 371 SIDCSLIAPAVLVLFIILMYLPPSTTFALSNGDEKTANKKAKRKLGLVV-QNLAFSQLAC 429
Query: 462 LAMFTFLACITERKSISSDPLNFNIFSIVFEIISAFGNVGYSLGYSCQKL--LKPDATCK 519
+++F +A ITER + +DPLNF+ +++FEIISA+GNVG S GYSC +L L P + C+
Sbjct: 430 ISVFVIVAFITERSRLRNDPLNFSALNMIFEIISAYGNVGLSTGYSCSRLQKLHPGSICQ 489
Query: 520 DASYGFVGRWTEEGKLIVILVMFLGRLKEF 549
D Y G W++EGKL+++ VM GRLK F
Sbjct: 490 DKPYSLSGWWSDEGKLLLVFVMLYGRLKAF 519
>Os01g0307500 Cation transporter family protein
Length = 554
Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 188/534 (35%), Positives = 280/534 (52%), Gaps = 43/534 (8%)
Query: 60 KQSYSFLVCKSNPLVVQLVYFVIISFAGFLALKNL--KPQGKPGPKDXXXXXXXXXXXXX 117
K+ Y + ++P +QL+YF+ IS GFL LK L K P P D
Sbjct: 15 KRIYHLFLFHAHPFWLQLLYFLFISLLGFLMLKALPMKTSMVPRPMDLDLIFTSVSATTV 74
Query: 118 XXXXXXEMEDLSDRQLWVLILLMLMGGEVFTSMLGLYFXXXXXXXXXXSQRSLPSIS--- 174
EME S+ QL ++ LLML+GGEVFTS+LGLYF + +LP
Sbjct: 75 SSMVAVEMESFSNSQLLLITLLMLLGGEVFTSILGLYFTNAKYSSKMIA--TLPDDDDHG 132
Query: 175 ----------------LDIEFNSPANNGDHKITECGQSEETMSQNQVQQNK--------- 209
+++E P + T + + + ++NK
Sbjct: 133 GSGKPPPPTTSPSSTLVELELAPPMDVVVVNPTTTATTHDEVELGLGRRNKRGCTCTTTH 192
Query: 210 ------SITYNPCAVLVRIVTGYFVATXXXXXXXXXXYFWIDSDARNVLKSKEINMYTFC 263
+ +L+ +V GY Y A V+ K I+ +TF
Sbjct: 193 TSSSSSASKTTTTRLLMFVVMGYHAVVHVAGYTAIVVYLSAVGGAGAVVAGKGISAHTFA 252
Query: 264 IFTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQILAGNTLFSPLLRLCVWVLGKVSG 323
IFT VS+FANCGF P N M FR LLLLV+P +L GNTLF LRL + L +V+G
Sbjct: 253 IFTVVSTFANCGFVPTNEGMVSFRSFPGLLLLVMPHVLLGNTLFPVFLRLAIAALERVTG 312
Query: 324 KAEYAYIL---QHPGETGYKHLHVRRNSVYIVLSVTGLILLQVMFICSFEWNSESLEGMN 380
E +L + G GY HL + ++ L+V L++ Q+ C+ EW S+ L G+
Sbjct: 313 WPELGELLIRRRRGGGEGYHHLLPSSRTRFLALTVAVLVVAQLALFCAMEWGSDGLRGLT 372
Query: 381 WLQKLVGLLFQSVNTRQAGESILDISTLSPSTLLLFAVVMYLPSDASFLTANADNQPL-- 438
QKLVG LF +VN+R +GE +LD+ST+S + ++L+ V+MYLP +F+ +Q
Sbjct: 373 AGQKLVGALFMAVNSRHSGEMVLDLSTVSSAVVVLYVVMMYLPPYTTFVPVQDKHQQTGA 432
Query: 439 TDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKSISSDPLNFNIFSIVFEIISAFG 498
+ S S ++W+ ++ LSCLA+F + CITER+ I+ DP+N+++ +IV E+ISA+G
Sbjct: 433 QSGQEGSSSSSIWQKLLMSPLSCLAIFIVVICITERRQIADDPINYSVLNIVVEVISAYG 492
Query: 499 NVGYSLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILVMFLGRLKEFILK 552
NVG+S GYSC + ++PD +C+D GF G+W+++GKL ++ VMF GRLK+F L
Sbjct: 493 NVGFSTGYSCARQVRPDGSCRDLWVGFSGKWSKQGKLTLMAVMFYGRLKKFSLH 546
>Os06g0701600 Cation transporter family protein
Length = 509
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 174/510 (34%), Positives = 250/510 (49%), Gaps = 28/510 (5%)
Query: 49 ISRARCVASSVKQSYSFLVCKSNPLVVQLVYFVIISFAGFLALKNLKPQG-KPGPKDXXX 107
+S AR +S F+ +PL++ L YF+II GF+AL L+P K P+
Sbjct: 9 VSSARHAINSSALICRFIAFHLSPLLIHLSYFLIIDVLGFVALVVLRPSNHKYNPRYIDM 68
Query: 108 XXXXXXXXXXXXXXXXEMEDLSDRQLWVLILLMLMGGEVFTSMLGLYFXXXXXXXXXXSQ 167
+MEDLS Q+ VL LLM +G E+F S LGL
Sbjct: 69 FFLSTSAVTVTGLATTQMEDLSSSQIAVLTLLMFLGSEMFLSFLGLVLESSKQNK----- 123
Query: 168 RSLPSISLDIEFNSPANNGDHKITECGQS--EETMSQNQVQQNKSITYNPCAVLVRIVTG 225
+ P N +T C QS EE + Q + I + LV +V
Sbjct: 124 ------------HDPENRRVSSVTVCEQSHLEEAIPQTPSMNSTDIKRSCHKYLVFVVLA 171
Query: 226 YFVATXXXXXXXXXXYFWIDSDARNVLKSKEINMYTFCIFTAVSSFANCGFTPLNSNMQP 285
Y + Y S AR+VL K IN F I VSSF N G P N +M
Sbjct: 172 YMIIILVTGSLLVFMYIAHVSSARDVLTRKSINKALFSISVTVSSFTNGGLLPTNESMAV 231
Query: 286 FRKNWVLLLLVIPQILAGNTLFSPLLRLCVWVLG--KVSGKAEYAYILQHPGETGYKHLH 343
F N LLLL+I QILAG+TL LRL +W L +++ E +++ + G+ HL
Sbjct: 232 FSSNNGLLLLLIGQILAGSTLLPMFLRLVIWALRGLRLAKAEEPDFMMNNSSSVGFSHLL 291
Query: 344 VRRNSVYIVLSVTGLILLQVMFICSFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGESIL 403
++++ + + V+ C W+S G+ LQK+ LF +V+ RQAGE+ +
Sbjct: 292 PNLQTIFLAAVEVAFVGMTVILFCCLNWDSAVFAGLTSLQKITNALFMAVSARQAGENSI 351
Query: 404 DISTLSPSTLLLFAVVMYLPSDASFLTANADNQ---PLTDKKTNSISRALWRNFTVNKLS 460
D S ++P+ L+LF V+MY PS +A D++ P +D +T S + + + L+
Sbjct: 352 DCSLVAPAALVLFMVMMYTPSLTKLFSACQDHKQIGPESDDRT-SKGKPFLKTMAFSPLA 410
Query: 461 CLAMFTFLACITERKSISSDPLNFNIFSIVFEIISAFGNVGYSLGYSCQKLLKPD--ATC 518
L CITER+SIS+DPLNF+ F+I+FE+ISA+GN+G S GYSC + L+ C
Sbjct: 411 FNTTVIMLVCITERRSISTDPLNFSTFNIIFEVISAYGNIGLSTGYSCSRQLQHQDGIAC 470
Query: 519 KDASYGFVGRWTEEGKLIVILVMFLGRLKE 548
+ Y F G W+E GKLI++L M GRL
Sbjct: 471 HEKPYSFSGWWSEPGKLILVLAMLYGRLNS 500
>Os01g0532600 Similar to HKT1 (High-affinity potassium uptake transporter)
Length = 509
Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 243/494 (49%), Gaps = 28/494 (5%)
Query: 65 FLVCKSNPLVVQLVYFVIISFAGFLALKNLKPQG-KPGPKDXXXXXXXXXXXXXXXXXXX 123
F+ +PL++ L YF+II GF++L L+P K P+
Sbjct: 25 FIAYHLSPLLIHLSYFLIIDILGFVSLVVLRPSNHKYNPRYVDMFFLSTSAVTVIGLATI 84
Query: 124 EMEDLSDRQLWVLILLMLMGGEVFTSMLGLYFXXXXXXXXXXSQRSLPSISLDIEFNSPA 183
+MEDLS Q+ +L LLM + ++F S LGL + P
Sbjct: 85 QMEDLSSSQIAILTLLMFLDSKMFLSFLGLVLESSKQNK-----------------HDPE 127
Query: 184 NNGDHKITECGQS--EETMSQNQVQQNKSITYNPCAVLVRIVTGYFVATXXXXXXXXXXY 241
N +T C QS EE Q + I LV +V Y + Y
Sbjct: 128 NRRVSSVTVCKQSQLEEATPQTPSMNSIDIKKRCLKYLVFVVLAYMIIILVTGSLLVFMY 187
Query: 242 FWIDSDARNVLKSKEINMYTFCIFTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQIL 301
S AR+VL K IN F I VSSF N G P N +M F N LLLL+I QIL
Sbjct: 188 IAHVSSARDVLTRKSINKALFSISVTVSSFTNGGLLPTNESMVVFSSNNGLLLLLIGQIL 247
Query: 302 AGNTLFSPLLRLCVWVLG--KVSGKAEYAYILQHPGETGYKHLHVRRNSVYIVLSVTGLI 359
AG+TLF LRL +W L +++ E +++ + G+ HL ++++ + +
Sbjct: 248 AGSTLFPVFLRLVIWALRGLRLAKAEEPDFMMNNSSAVGFSHLLPNLQTIFLAVVEVAFV 307
Query: 360 LLQVMFICSFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGESILDISTLSPSTLLLFAVV 419
+ V+ C W+S G++ LQK+ LF +VN RQAGE+ +D S ++P+ L+LF V+
Sbjct: 308 AMTVILFCCLNWDSVVFAGLSSLQKITNALFMAVNARQAGENSIDCSLVAPAALVLFMVM 367
Query: 420 MYLPSDASFLTANADNQ---PLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKS 476
MY PS +A D++ P +D +T S + + + L L CITER+S
Sbjct: 368 MYTPSLTKLFSACQDHKRIGPESDDRT-SKGKPFLKMMAFSPLGFNTTVIMLVCITERRS 426
Query: 477 ISSDPLNFNIFSIVFEIISAFGNVGYSLGYSCQKLLKPDA--TCKDASYGFVGRWTEEGK 534
+S+DPLN + F+I+FE+ISA+GN+G S GYSC + L+ C + +Y F G W+E GK
Sbjct: 427 LSTDPLNLSTFNIIFEVISAYGNIGLSTGYSCSRQLQHQEGIACHEKAYNFSGWWSEPGK 486
Query: 535 LIVILVMFLGRLKE 548
LI++L M GRL
Sbjct: 487 LILVLAMLCGRLNS 500
>Os04g0607600 Cation transporter family protein
Length = 500
Score = 242 bits (617), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 171/485 (35%), Positives = 253/485 (52%), Gaps = 10/485 (2%)
Query: 73 LVVQLVYFVIISFAGFLALKNLKPQGKPG--PKDXXXXXXXXXXXXXXXXXXXEMEDLSD 130
L + + YF+ IS G+ L LK + +PG P+ EME S+
Sbjct: 13 LSMHVAYFLAISCLGYGLLGVLKVR-EPGAAPRRIDRFFTAVSAATVSSMSTVEMEVFSN 71
Query: 131 RQLWVLILLMLMGGEVFTSMLGLYFXXXXXXXXXXSQRSLPSISLDIEFNSPANNGDHKI 190
QL VL +LML+GGEVF S++GL + D+ + + GD +
Sbjct: 72 GQLVVLTVLMLLGGEVFVSLVGLASKWSKLRSDAMDRSRRVESHGDVAL-ADIDGGDVE- 129
Query: 191 TECGQSEETMSQNQVQQNKSITYNPCAVLVRIVTGYFVATXXXXXXXXXXYFWIDSDARN 250
EE S+ + ++ +N L IV F Y AR
Sbjct: 130 NPTSSGEEAASRRRPMDADTLRHNAVRALFYIVLAIFAVVHVVGAVAVAAYVLASPGARR 189
Query: 251 VLKSKEINMYTFCIFTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQILAGNTLFSPL 310
L K +N +TF +FT VS+F+NCGF P N NM F+++ L LL++PQ+LAGNTLF+PL
Sbjct: 190 TLGDKSLNTWTFAVFTTVSTFSNCGFMPTNENMVVFKRDAPLQLLLVPQVLAGNTLFAPL 249
Query: 311 LRLCVWVLGKVSGKAEYAYILQHPGETGYK---HLHVRRNSVYIVLSVTGLILLQVMFIC 367
L CVW + + E + + G HL R + +V + + + +C
Sbjct: 250 LAACVWAAAAATRREELVEMAREGGRAAAAGYAHLMPARRCWMLAATVAAFVAVLMALVC 309
Query: 368 SFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGESILDISTLSPSTLLLFAVVMYLPSDAS 427
EW +L+GM+ +K+V LF +VN R GES +D+S L+P+ L+LF ++MYLP +
Sbjct: 310 GMEWGG-ALQGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLMMYLPPYTT 368
Query: 428 FLTANADNQPLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKSISSDPLNFNIF 487
+ +N D + L + +++LS L +F CITER+ + DPLNF++
Sbjct: 369 WFPFE-ENSTTKDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKEDPLNFSVL 427
Query: 488 SIVFEIISAFGNVGYSLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILVMFLGRLK 547
SIV E++SA+GNVG+S+GYSC + + PD C D GFVGRW++ GKLI+I VMF GRLK
Sbjct: 428 SIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDSGKLILIFVMFFGRLK 487
Query: 548 EFILK 552
+F +K
Sbjct: 488 KFSMK 492
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,097,399
Number of extensions: 569617
Number of successful extensions: 1321
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1294
Number of HSP's successfully gapped: 8
Length of query: 552
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 446
Effective length of database: 11,501,117
Effective search space: 5129498182
Effective search space used: 5129498182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 159 (65.9 bits)