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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0532600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to HKT1 (High-affinity potassium uptake transporter).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.98 (0.0406) R2 : 0.903
β1 : 2.12 (0.149) R2dD : 0.0433 R2D : 0.0258
β2 : 2.68 (0.114) R2dC : 0.137 R2C : 0.344
β3 : -5.56 (0.121) R2dE : 0.532 R2E : 0.719
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.333 (0.0868) R2dN8 : 0.00383 R2N8 : -0.00347
σ : 0.759
deviance : 265.7
__
_____
C
peak time of C : 5.37
E
wheather : temperature
threshold : 6.248
memory length : 249
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 10

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.47 0.767 6.98 2.12 2.78 -5.58 0.596 0.373 0.332 5.51 7.89 255 15.1 9.92
266.14 0.76 6.98 2.13 2.7 -5.77 0.686 -- 0.373 5.22 6.884 250 15.1 9.97
266.63 0.761 6.98 2.13 2.81 -5.54 -- 0.317 0.327 5.46 6.838 253 15.1 9.95
265.7 0.759 6.98 2.12 2.68 -5.56 -- -- 0.333 5.37 6.248 249 15.1 10
414.06 0.948 7.01 2.21 -- -6.59 -- 1.59 0.439 -- 2.301 225 14.3 10.2
450.48 0.995 6.9 1.7 6.34 -- 1.42 -- 0.131 8.05 -- -- -- --
456.54 1 6.9 1.74 6.33 -- -- -- 0.13 8.05 -- -- -- --
370 0.896 7.01 2.23 -- -7 -- -- 0.449 -- 2.709 325 13.1 10.2
376.37 0.904 7.01 -- 2.87 -5.46 -- -- 0.121 5.22 3.768 261 15 10
2654.12 2.41 7.06 1.8 -- -- -- -- 0.209 -- -- -- -- --
536.34 1.08 6.94 -- 6.35 -- -- -- -0.0634 8.03 -- -- -- --
481.55 1.02 7.08 -- -- -6.52 -- -- 0.126 -- -5.85 319 13.2 9.82
2739.46 2.44 7.1 -- -- -- -- -- 0.00967 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.93 temperature 10.0 270 > th dose dependent rect. 15 10
12 303.72 temperature 25.0 270 > th dose independent rect. 16 16
13 303.96 temperature 30.0 270 < th dose dependent rect. 18 11
14 304.13 temperature 25.0 270 < th dose independent rect. 18 11
17 305.54 temperature 10.0 270 > th dose dependent rect. 16 18
34 310.69 temperature 25.0 270 > th dose independent rect. 16 9
45 313.67 humidity 90.0 90 < th dose independent rect. 16 19
72 318.54 temperature 15.0 10 > th dose dependent rect. 16 20
92 320.63 humidity 90.0 270 < th dose independent rect. 15 9
102 321.81 radiation 1.0 270 > th dose independent rect. 16 18
105 322.11 radiation 1.0 270 > th dose independent rect. 15 20
106 322.13 temperature 30.0 270 < th dose dependent rect. 12 17
118 323.71 humidity 50.0 270 > th dose dependent rect. 18 11
125 324.33 radiation 1.0 720 > th dose independent rect. 15 3
162 327.75 temperature 25.0 270 > th dose independent sin 13 NA
196 330.96 temperature 25.0 270 < th dose independent sin 13 NA
212 332.20 radiation 1.0 720 > th dose independent rect. 15 14
227 332.58 radiation 1.0 720 < th dose dependent rect. 17 12
237 333.17 temperature 10.0 720 > th dose dependent rect. 15 2
258 334.21 radiation 1.0 720 < th dose dependent rect. 16 6
275 335.00 temperature 20.0 90 > th dose dependent sin 11 NA
291 336.13 radiation 1.0 720 < th dose independent rect. 15 7
314 337.56 wind 1.0 270 > th dose independent rect. 14 11
315 337.56 precipitation 0.1 270 < th dose independent rect. 14 11
316 337.56 precipitation 0.1 270 < th dose dependent rect. 14 11
320 337.79 precipitation 0.1 270 < th dose independent rect. 14 21
321 337.79 precipitation 0.1 270 < th dose dependent rect. 14 21
366 339.56 radiation 1.0 270 < th dose independent sin 11 NA
374 339.71 radiation 1.0 270 > th dose independent sin 11 NA
376 339.75 radiation 1.0 720 > th dose dependent rect. 15 2
382 340.32 radiation 1.0 720 < th dose independent rect. 16 13
408 341.14 temperature 10.0 90 > th dose dependent sin 10 NA
420 341.52 radiation 1.0 720 > th dose independent sin 14 NA
421 341.60 temperature 30.0 90 < th dose dependent sin 11 NA
441 342.04 radiation 1.0 720 < th dose independent rect. 3 19
457 342.57 radiation 10.0 270 < th dose dependent sin 11 NA
471 343.17 precipitation 0.1 270 < th dose independent rect. 15 19
472 343.17 precipitation 0.1 270 < th dose dependent rect. 15 19
491 343.97 radiation 1.0 720 > th dose dependent rect. 15 14
511 344.18 radiation 1.0 720 < th dose independent rect. 10 12
512 344.20 temperature 20.0 10 > th dose independent rect. 16 20
533 344.70 humidity 50.0 270 > th dose dependent rect. 11 18
559 345.56 radiation 1.0 720 < th dose dependent rect. 10 12
579 346.06 radiation 1.0 720 < th dose dependent rect. 3 19
580 346.07 temperature 20.0 270 > th dose dependent sin 13 NA
586 346.23 radiation 1.0 720 < th dose independent sin 14 NA
589 346.30 radiation 20.0 720 < th dose dependent rect. 15 15
603 346.63 radiation 1.0 720 > th dose independent rect. 6 12
623 347.03 humidity 50.0 270 > th dose independent rect. 10 19
665 347.95 radiation 1.0 720 > th dose independent sin 19 NA
694 348.82 radiation 1.0 720 > th dose independent rect. 6 23
745 349.83 wind 9.0 270 < th dose independent rect. 11 3
747 349.90 radiation 1.0 720 < th dose independent rect. 1 22
748 349.95 radiation 20.0 720 > th dose independent rect. 15 16
786 350.45 radiation 1.0 720 < th dose dependent sin 14 NA
796 350.58 precipitation 0.1 270 < th dose independent rect. 11 3
797 350.58 precipitation 0.1 270 < th dose dependent rect. 11 3
803 350.74 temperature 10.0 270 > th dose independent rect. 11 3
804 350.74 atmosphere 995.0 270 > th dose independent rect. 11 3
805 350.74 atmosphere 1015.0 270 < th dose independent rect. 11 3
806 350.74 radiation 1.0 270 > th dose independent rect. 11 3
808 350.74 temperature 10.0 270 > th dose independent rect. 14 21
810 350.83 temperature 10.0 270 > th dose independent rect. 14 11
811 350.83 temperature 10.0 270 > th dose independent rect. 1 13
812 350.83 atmosphere 995.0 270 > th dose independent rect. 1 13
813 350.83 atmosphere 1015.0 270 < th dose independent rect. 1 13
822 351.00 wind 9.0 270 < th dose independent rect. 1 13
824 351.04 humidity 90.0 90 < th dose dependent rect. 17 18
845 351.25 wind 9.0 270 < th dose independent rect. 14 21
881 351.88 temperature 25.0 720 > th dose independent rect. 15 3
891 352.13 radiation 1.0 720 < th dose independent rect. 10 19
913 352.30 precipitation 0.1 270 < th dose independent rect. 1 13
915 352.30 precipitation 0.1 270 < th dose dependent rect. 1 13
947 353.11 atmosphere 1015.0 270 < th dose independent rect. 15 19
973 353.43 wind 9.0 270 < th dose independent rect. 10 5
988 353.74 atmosphere 995.0 270 > th dose independent rect. 10 5
990 353.78 wind 9.0 270 < th dose independent rect. 14 11