BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0600500 Os04g0600500|AK105483
(213 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0600500 Disease resistance/zinc finger/chromosome cond... 374 e-104
Os02g0700700 Disease resistance/zinc finger/chromosome cond... 158 3e-39
Os08g0462700 Disease resistance/zinc finger/chromosome cond... 78 5e-15
Os03g0853500 Disease resistance/zinc finger/chromosome cond... 76 2e-14
Os05g0384800 Similar to Chromosome condensation regulator p... 75 3e-14
Os01g0952300 Pleckstrin homology-type domain containing pro... 75 5e-14
Os04g0686200 Similar to Chromosome condensation regulator p... 69 2e-12
Os04g0583700 Pleckstrin homology-type domain containing pro... 65 3e-11
>Os04g0600500 Disease resistance/zinc finger/chromosome condensation-like region
domain containing protein
Length = 213
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/213 (86%), Positives = 185/213 (86%)
Query: 1 MLACIACSSKEGGEDGSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAXXX 60
MLACIACSSKEGGEDGSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATA
Sbjct: 1 MLACIACSSKEGGEDGSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAGSP 60
Query: 61 XXXXXXXXXXXXXXIDDSAFMTTTRPGGEAYMYTXXXXXXXXXXXSTSMATWDMTRSKSN 120
IDDSAFMTTTRPGGEAYMYT STSMATWDMTRSKSN
Sbjct: 61 SFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDMTRSKSN 120
Query: 121 RGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGN 180
RGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGN
Sbjct: 121 RGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGN 180
Query: 181 DLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
DLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL
Sbjct: 181 DLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
>Os02g0700700 Disease resistance/zinc finger/chromosome condensation-like region
domain containing protein
Length = 411
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 125/223 (56%), Gaps = 18/223 (8%)
Query: 1 MLACIACSSKEGGEDGSRGA-ATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAXX 59
MLACIACS+K+GGE G R A ATP ++ KSLTSQLKDMVLKFSGS +HQ+ +
Sbjct: 1 MLACIACSTKDGGEGGHRSATATP---NSGKSLTSQLKDMVLKFSGSGRHQYKSGGSPSL 57
Query: 60 XXXXXXXXXXXXXXX--IDDSAFMTTTRPGGEAYMYTXXXXXXXXXXXSTSMATWDMTRS 117
ID+S F T+ GEAY Y + S TWD+
Sbjct: 58 RTSRFHRSSRLAAYPGIIDESGF--TSDGAGEAYTYMRTTTASAGARAAPS--TWDLPPK 113
Query: 118 KSNRGWQQDAGRSPG-------GTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQI 170
++R +Q RSP G +++ + V + ED VPREWTAQVEPGVQI
Sbjct: 114 VNHRSFQPRVIRSPSASGVPSIGEEDYDDDDDDDDEETVLLEEDRVPREWTAQVEPGVQI 173
Query: 171 TFVTLPGG-GNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
TFV++PGG GNDLKRIRFSRE F + A+ WW N DR+ Y
Sbjct: 174 TFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELY 216
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 41/55 (74%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
EW Q EPGV IT G +L+R+RFSRERFGE+RAKVWWE NRDRI AQYL
Sbjct: 357 EWVEQDEPGVSITIREFGDGTRELRRVRFSRERFGEERAKVWWEQNRDRIHAQYL 411
>Os08g0462700 Disease resistance/zinc finger/chromosome condensation-like region
domain containing protein
Length = 397
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 153 EDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
ED +EW AQVEPGV ITF++LP GGNDLKRIRFSRE F + +A+ WW N +++ Y
Sbjct: 145 EDDEAKEWVAQVEPGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVMELY 204
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 158 REWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
REW + EPGV IT LPGG +L+R+RFSRE+F E A++WWE NR RI QYL
Sbjct: 342 REWVEEDEPGVYITIRALPGGIRELRRVRFSREKFSEMHARLWWEENRARIHDQYL 397
>Os03g0853500 Disease resistance/zinc finger/chromosome condensation-like region
domain containing protein
Length = 329
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 158 REWTAQVEPGVQITFVTLPGGG-NDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
REW AQVEPGVQITFV+L GGG NDLKRIRFSRE + + +A+ WW N +RI Y
Sbjct: 86 REWVAQVEPGVQITFVSLAGGGGNDLKRIRFSREMYDKWQAQKWWGENNERIMELY 141
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 40/55 (72%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
EW Q EPGV IT L G +L+R+RFSRERF E AK+WWE N++RIQAQYL
Sbjct: 275 EWVIQDEPGVYITVRELADGTRELRRVRFSRERFAELNAKLWWEENKERIQAQYL 329
>Os05g0384800 Similar to Chromosome condensation regulator protein (Fragment)
Length = 1086
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
EW Q EPGV IT LPGG DLKR+RFSR+RF E +A+ WW+ NR R+ QY
Sbjct: 1015 EWVEQDEPGVYITLTALPGGTRDLKRVRFSRKRFSETQAEQWWQENRARVYEQY 1068
>Os01g0952300 Pleckstrin homology-type domain containing protein
Length = 1133
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
EW Q EPGV IT LPGG DLKR+RFSR+RF E +A+ WW+ NR R+ Y
Sbjct: 1021 EWVEQDEPGVYITLTALPGGARDLKRVRFSRKRFSETQAEQWWQENRTRVYQHY 1074
>Os04g0686200 Similar to Chromosome condensation regulator protein (Fragment)
Length = 1057
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 154 DAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
+ V EW Q EPGV +T V+L G +LKR+RFSR RFGE +A+ WW NR+++ +Y
Sbjct: 985 NQVEAEWIEQYEPGVYLTLVSLRDGTKELKRVRFSRRRFGEHQAESWWNDNREKVYDKY 1043
>Os04g0583700 Pleckstrin homology-type domain containing protein
Length = 1065
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 161 TAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
T Q+E GV +TF T G D+KRIRFSR+ FGE A+ WWEHN+ R+ Y
Sbjct: 972 TEQIEHGVYVTFSTSSCGKKDIKRIRFSRKHFGEKEAQHWWEHNKTRVYDNY 1023
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,353,768
Number of extensions: 280409
Number of successful extensions: 553
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 11
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)