Os08g0462700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance/zinc finger/chromosome condensation-like region domain containing protein.
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Os08g0462700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance/zinc finger/chromosome condensation-like region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.44 | 0.327 | 7.64 | -1.22 | 0.698 | 0.943 | 0.359 | -0.902 | -0.163 | 19.8 | 23.77 | 1463 | -- | -- |
| 48.77 | 0.325 | 7.62 | -0.955 | 0.676 | 0.888 | 0.386 | -- | -0.112 | 19.9 | 23.27 | 1540 | -- | -- |
| 48.76 | 0.325 | 7.64 | -1.21 | 0.709 | 0.948 | -- | -0.844 | -0.163 | 19.6 | 23.6 | 1409 | -- | -- |
| 49.1 | 0.326 | 7.62 | -0.955 | 0.705 | 0.911 | -- | -- | -0.113 | 19.3 | 23 | 1290 | -- | -- |
| 52.23 | 0.337 | 7.62 | -1.11 | -- | 1.4 | -- | -0.569 | -0.183 | -- | 22.88 | 695 | -- | -- |
| 77.54 | 0.413 | 7.58 | -0.639 | 0.693 | -- | 0.38 | -- | 0.0685 | 20.1 | -- | -- | -- | -- |
| 77.96 | 0.413 | 7.58 | -0.649 | 0.695 | -- | -- | -- | 0.0692 | 20 | -- | -- | -- | -- |
| 52.54 | 0.338 | 7.6 | -0.979 | -- | 1.37 | -- | -- | -0.138 | -- | 22.9 | 693 | -- | -- |
| 70.72 | 0.392 | 7.58 | -- | 0.501 | 0.84 | -- | -- | 0.0353 | 19.1 | 23.05 | 890 | -- | -- |
| 104.38 | 0.477 | 7.56 | -0.656 | -- | -- | -- | -- | 0.0605 | -- | -- | -- | -- | -- |
| 89.08 | 0.441 | 7.56 | -- | 0.699 | -- | -- | -- | 0.142 | 20 | -- | -- | -- | -- |
| 76.25 | 0.407 | 7.57 | -- | -- | 1.16 | -- | -- | 0.00814 | -- | 23.34 | 650 | -- | -- |
| 115.73 | 0.502 | 7.54 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 2 | 48.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 32 | 48.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 37 | 48.37 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 144 | 48.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 176 | 48.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 190 | 48.85 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 193 | 48.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 194 | 48.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 211 | 48.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 212 | 48.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 227 | 49.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 249 | 49.12 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 267 | 49.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 275 | 49.27 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 316 | 49.48 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 346 | 49.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 347 | 49.62 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 361 | 49.72 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 399 | 49.85 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 405 | 49.87 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 419 | 49.90 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 436 | 49.95 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 442 | 49.95 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 475 | 50.07 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 487 | 50.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 507 | 50.13 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 17 |
| 509 | 50.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 517 | 50.15 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 518 | 50.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 520 | 50.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 523 | 50.16 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 530 | 50.17 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 539 | 50.18 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 559 | 50.20 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 593 | 50.24 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 610 | 50.27 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 627 | 50.30 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 661 | 50.34 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 675 | 50.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 679 | 50.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 739 | 50.43 | wind | 7 | 43200 | > th | dose dependent | sin | 19 | NA |
| 784 | 50.48 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 872 | 50.60 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 942 | 50.68 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 959 | 50.70 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 998 | 50.74 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 12 |