FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0583700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pleckstrin homology-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.03) R2 : 0.316
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.12 (0.151) R2dE : 0.308 R2E : 0.315
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0507 (0.0642) R2dN8 : 0.00109 R2N8 : 0.00756
σ : 0.562
deviance : 145.53
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.5
memory length : 9018
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.33 0.536 3.22 -0.387 0.358 0.525 -0.313 -3.49 -0.0857 3.44 20.39 3271 -- --
133.74 0.539 3.32 -0.651 0.369 1.94 -0.357 -- -0.222 4.03 16.98 3291 -- --
130.59 0.532 3.21 -0.356 0.36 0.527 -- -3.46 -0.0767 3.63 20.7 3268 -- --
133.83 0.539 3.32 -0.635 0.364 1.95 -- -- -0.205 3.67 16.83 3294 -- --
137.74 0.547 3.21 -0.35 -- 0.48 -- -3.53 -0.0665 -- 20.7 3270 -- --
163.8 0.6 3.36 -1.22 0.341 -- -0.229 -- -0.366 3.35 -- -- -- --
163.94 0.6 3.36 -1.22 0.342 -- -- -- -0.365 3.56 -- -- -- --
141.17 0.553 3.32 -0.635 -- 1.94 -- -- -0.206 -- 16.8 3283 -- --
140.97 0.553 3.28 -- 0.361 2.28 -- -- -0.0359 3.56 19.06 3329 -- --
170.48 0.61 3.36 -1.2 -- -- -- -- -0.356 -- -- -- -- --
203.09 0.667 3.33 -- 0.318 -- -- -- -0.229 3.58 -- -- -- --
145.53 0.562 3.29 -- -- 2.12 -- -- -0.0507 -- 18.5 9018 -- --
208.74 0.674 3.33 -- -- -- -- -- -0.222 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.06 temperature 20 1440 < th dose dependent rect. 4 1
2 128.19 temperature 15 4320 < th dose independent rect. 4 1
6 129.07 wind 9 14400 < th dose independent rect. 23 1
7 129.09 wind 9 14400 < th dose independent rect. 23 4
8 129.15 wind 9 14400 > th dose dependent rect. 23 1
9 129.16 wind 9 14400 > th dose independent rect. 23 1
17 130.20 humidity 90 1440 < th dose dependent rect. 5 1
28 130.69 humidity 90 14400 > th dose dependent rect. 12 1
36 131.33 temperature 15 4320 > th dose independent rect. 3 5
44 131.63 temperature 15 4320 > th dose independent rect. 3 3
45 131.71 temperature 20 4320 < th dose independent rect. 9 1
57 132.22 temperature 20 4320 > th dose independent rect. 9 1
67 132.37 temperature 20 4320 > th dose independent rect. 18 2
97 132.90 wind 7 14400 > th dose dependent rect. 21 1
98 132.90 temperature 20 1440 < th dose dependent rect. 19 11
99 132.91 temperature 20 4320 < th dose independent rect. 18 2
108 132.99 temperature 20 4320 < th dose dependent rect. 9 1
119 133.09 wind 9 14400 < th dose independent rect. 23 9
129 133.17 wind 9 14400 > th dose dependent rect. 23 9
136 133.20 humidity 90 4320 < th dose independent rect. 10 2
139 133.21 humidity 90 14400 > th dose independent rect. 12 1
151 133.36 wind 5 14400 > th dose independent rect. 20 4
152 133.36 humidity 50 43200 < th dose dependent rect. 19 2
174 133.48 wind 5 14400 > th dose dependent rect. 21 3
178 133.51 temperature 20 1440 > th dose independent rect. 5 6
187 133.56 temperature 20 1440 > th dose independent rect. 5 8
189 133.57 radiation 20 14400 < th dose independent rect. 5 1
192 133.58 temperature 20 4320 < th dose independent rect. 9 4
207 133.63 temperature 20 270 > th dose independent rect. 18 22
220 133.70 temperature 20 1440 < th dose independent rect. 5 8
235 133.78 humidity 90 4320 > th dose independent rect. 10 2
240 133.79 humidity 60 43200 < th dose independent rect. 21 3
271 133.91 temperature 20 4320 > th dose independent rect. 8 13
284 133.96 temperature 25 4320 < th dose dependent rect. 9 5
307 134.01 humidity 70 43200 < th dose dependent rect. 22 1
314 134.03 humidity 60 43200 < th dose independent rect. 22 1
316 134.03 temperature 20 30 > th dose independent rect. 8 23
319 134.04 temperature 15 4320 < th dose independent sin 5 NA
324 134.06 temperature 25 4320 < th dose dependent rect. 9 3
336 134.11 temperature 20 4320 > th dose independent rect. 9 15
338 134.11 humidity 60 43200 < th dose dependent rect. 21 3
341 134.13 humidity 50 43200 < th dose independent rect. 19 2
347 134.14 humidity 60 43200 > th dose independent rect. 22 2
355 134.17 temperature 20 1440 < th dose dependent rect. 22 3
371 134.21 temperature 25 4320 < th dose dependent rect. 11 1
390 134.24 temperature 20 4320 < th dose independent rect. 8 12
394 134.25 temperature 20 1440 < th dose dependent sin 12 NA
408 134.30 temperature 15 4320 > th dose independent sin 5 NA
414 134.32 radiation 20 14400 < th dose independent rect. 3 3
436 134.36 temperature 20 720 > th dose independent rect. 22 19
438 134.36 temperature 20 1440 < th dose dependent rect. 20 6
441 134.37 humidity 90 4320 > th dose independent rect. 7 7
483 134.44 humidity 90 4320 > th dose independent rect. 7 10
492 134.47 temperature 20 720 > th dose independent rect. 3 17
505 134.49 wind 9 14400 > th dose independent rect. 20 8
521 134.51 wind 9 14400 < th dose dependent rect. 23 1
560 134.57 humidity 50 43200 > th dose independent rect. 19 2
573 134.58 temperature 20 4320 > th dose independent sin 19 NA
585 134.59 temperature 20 720 > th dose independent sin 1 NA
603 134.62 humidity 50 43200 > th dose independent rect. 19 8
621 134.63 temperature 25 4320 < th dose dependent rect. 13 1
698 134.76 temperature 20 270 > th dose independent rect. 3 22
729 134.79 humidity 90 14400 > th dose dependent rect. 5 11
815 134.95 wind 3 43200 < th dose dependent rect. 7 2
843 134.98 humidity 90 14400 > th dose dependent rect. 4 13
902 135.07 temperature 20 4320 < th dose independent sin 19 NA
912 135.07 wind 9 14400 < th dose dependent rect. 20 6
961 135.11 wind 9 14400 < th dose dependent rect. 21 4
971 135.13 temperature 15 14400 > th dose independent rect. 12 2
987 135.14 wind 5 14400 > th dose independent rect. 20 17
989 135.14 humidity 90 14400 > th dose dependent sin 0 NA