Os01g0952300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pleckstrin homology-type domain containing protein.
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Os01g0952300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pleckstrin homology-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.55 | 0.276 | 10.3 | 0.137 | 0.643 | -0.576 | -0.164 | -0.855 | -0.106 | 1.22 | 24.8 | 1510 | -- | -- |
| 35.82 | 0.279 | 10.3 | -0.0489 | 0.674 | -0.509 | -0.0529 | -- | -0.14 | 1.11 | 24.5 | 2935 | -- | -- |
| 34.64 | 0.274 | 10.3 | 0.135 | 0.649 | -0.58 | -- | -0.837 | -0.108 | 1.29 | 24.77 | 1532 | -- | -- |
| 34.83 | 0.275 | 10.3 | -0.156 | 0.615 | -0.68 | -- | -- | -0.182 | 1.15 | 24.4 | 2939 | -- | -- |
| 51.15 | 0.333 | 10.3 | 0.18 | -- | -0.65 | -- | -0.841 | -0.0936 | -- | 24.8 | 1000 | -- | -- |
| 47.14 | 0.322 | 10.3 | 0.0931 | 0.665 | -- | -0.132 | -- | 0.0291 | 1.32 | -- | -- | -- | -- |
| 47.21 | 0.322 | 10.3 | 0.0975 | 0.666 | -- | -- | -- | 0.0297 | 1.34 | -- | -- | -- | -- |
| 50.42 | 0.331 | 10.3 | -0.108 | -- | -0.778 | -- | -- | -0.212 | -- | 24.7 | 993 | -- | -- |
| 35.38 | 0.277 | 10.3 | -- | 0.625 | -0.653 | -- | -- | -0.145 | 1.14 | 24.5 | 2934 | -- | -- |
| 74.51 | 0.403 | 10.3 | 0.124 | -- | -- | -- | -- | 0.0436 | -- | -- | -- | -- | -- |
| 47.46 | 0.322 | 10.3 | -- | 0.667 | -- | -- | -- | 0.0189 | 1.35 | -- | -- | -- | -- |
| 50.58 | 0.331 | 10.3 | -- | -- | -0.792 | -- | -- | -0.255 | -- | 24.7 | 1012 | -- | -- |
| 74.91 | 0.404 | 10.3 | -- | -- | -- | -- | -- | 0.0299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 2 | 32.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 8 | 32.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 13 | 32.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 19 | 32.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 49 | 33.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 57 | 33.12 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 88 | 33.22 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 120 | 33.28 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 139 | 33.31 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 197 | 33.42 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 237 | 33.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 241 | 33.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 244 | 33.50 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 251 | 33.51 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 257 | 33.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 293 | 33.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 295 | 33.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 347 | 33.61 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 348 | 33.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 384 | 33.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 522 | 33.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 553 | 33.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 583 | 33.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 7 |