Os04g0600500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance/zinc finger/chromosome condensation-like region domain containing protein.
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Os04g0600500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance/zinc finger/chromosome condensation-like region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 205.49 | 0.674 | 4.62 | -0.613 | 0.539 | 1.62 | -1.78 | 1.96 | 0.46 | 6.27 | 19.92 | 5964 | -- | -- |
| 203.79 | 0.665 | 4.65 | -0.908 | 0.613 | 1.44 | -1.42 | -- | 0.539 | 6.28 | 25.66 | 6067 | -- | -- |
| 212.17 | 0.678 | 4.6 | -0.585 | 0.583 | 1.71 | -- | 2.41 | 0.463 | 7.03 | 18.66 | 6230 | -- | -- |
| 211.09 | 0.677 | 4.65 | -0.936 | 0.594 | 1.42 | -- | -- | 0.536 | 6.74 | 25.6 | 6075 | -- | -- |
| 226.69 | 0.701 | 4.6 | -0.536 | -- | 1.78 | -- | 2.69 | 0.513 | -- | 18.16 | 5751 | -- | -- |
| 287.5 | 0.795 | 4.61 | -0.365 | 0.556 | -- | -1.76 | -- | 0.728 | 6.18 | -- | -- | -- | -- |
| 294.89 | 0.804 | 4.61 | -0.382 | 0.55 | -- | -- | -- | 0.735 | 6.62 | -- | -- | -- | -- |
| 225.01 | 0.699 | 4.65 | -0.91 | -- | 1.47 | -- | -- | 0.618 | -- | 26.07 | 5758 | -- | -- |
| 233.05 | 0.711 | 4.65 | -- | 0.476 | 1.38 | -- | -- | 0.692 | 6.64 | 26.76 | 5869 | -- | -- |
| 310.69 | 0.824 | 4.62 | -0.369 | -- | -- | -- | -- | 0.746 | -- | -- | -- | -- | -- |
| 298.74 | 0.809 | 4.6 | -- | 0.546 | -- | -- | -- | 0.777 | 6.66 | -- | -- | -- | -- |
| 242.63 | 0.725 | 4.6 | -- | -- | 1.19 | -- | -- | 0.848 | -- | 28 | 5731 | -- | -- |
| 314.27 | 0.827 | 4.61 | -- | -- | -- | -- | -- | 0.787 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 3 | 196.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 14 | 198.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 22 | 200.04 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 37 | 200.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 41 | 201.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 99 | 202.83 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 167 | 204.59 | temperature | 20 | 4320 | > th | dose dependent | sin | 8 | NA |
| 193 | 205.04 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 5 |
| 205 | 205.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 210 | 205.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 212 | 205.20 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 228 | 205.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 247 | 205.48 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 249 | 205.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 345 | 206.48 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 364 | 206.67 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 380 | 206.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 412 | 207.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 471 | 207.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 512 | 207.54 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 529 | 207.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 542 | 207.65 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 651 | 208.07 | temperature | 30 | 4320 | < th | dose dependent | sin | 8 | NA |
| 749 | 208.43 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 840 | 208.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 883 | 208.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 984 | 209.17 | temperature | 20 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 989 | 209.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 994 | 209.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 1 |